1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
CAAAATGCCACTCAAACAACTACACCTGTCCCCCCTGCTGCTCCGGATGCACGGACACAAGAAATGATAAACGAGAAACTGAAAAAGGCAGAAGAACTAGgtatctaccttttgctcttctgttacccccaatacttttacccccttaactgctaaatgcaaatctccattgacatgcttgttatactctccttacatatatcatgaggtgcttaatgatctctcaatttatgttgaatag
species | Zea mays |
transcript | GRMZM2G028096_T02 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: ACGGACACAAGAAATGATAAACGAGAAACTGAAAAAGGCAGAAGAACTAG GTGAGAATGGGATGGTTGATGAAGCCCAAAAATTGTTGGATGAGGCGGAAGEST: gi|50324674|gb|CO519800.1|CO519800
genomic: ACGGACACAAGAAATGATAAACGAGAAACTGAAAAAGGCAGAAGAACTAGgtatctacct ... tgttgaatagGTGAGAATGGGATGGTTGATGAAGCCCAAAAATTGTTGGATGAGGCGGAAG
EST: ACGGACACAAGAAATGATAAACGAGAAACTGAAAAAGGCAGAAGAACTAG GTGAGAATGGGATGGTTGATGAAGCCCAAAAATTGTTGGATGAGGCGGAAGEST: gi|71764556|gb|DR962493.1|DR962493
genomic: ACGGACACAAGAAATGATAAACGAGAAACTGAAAAAGGCAGAAGAACTAGgtatctacct ... tgttgaatagGTGAGAATGGGATGGTTGATGAAGCCCAAAAATTGTTGGATGAGGCGGAAG
EST: ACGGACACAAGAAATGATAAACGAGAAACTGAAAAAGGCAGAAGAACTAG GTGAGAATGGGATGGTTGATGAAGCTCAAAAATTGTTGGATGAGGEST: gi|31910839|gb|CD651624.1|CD651624
genomic: ACGGACACAAGAAATGATAAACGAGAAACTGAAAAAGGCAGAAGAACTAGgtatctacct ... tgttgaatagGTGAGAATGGGATGGTTGATGAAGCCCAAAAATTGTTGGATGAGG
EST: ACGGACACAAGAAATGATAAACGAGAAACTGAAAAAGGCAGAAGAACTAG GTGAGAATGGGATGGTTGATGAAGCCCAAAAATTGTTGGATGAGGCGGAAG
genomic: ACGGACACAAGAAATGATAAACGAGAAACTGAAAAAGGCAGAAGAACTAGgtatctacct ... tgttgaatagGTGAGAATGGGATGGTTGATGAAGCCCAAAAATTGTTGGATGAGGCGGAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAAAATGCCACTCAAACAACTACACCTGTCCCCCCTGCTGCTCCGGATGCACGGACACAAGAAATGATAAACGAGAAACTGAAAAAGGCAGAAGAACTAGgtatctaccttttgctcttctgttacccccaatacttttacccccttaactgctaaatgcaaatctccattgacatgcttgttatactctccttacatatatcatgaggtgcttaatgatctctcaatttatgttgaatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC