1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
TGACCGTCGCTTGGCAGATCATTTTGGAGGGAAACTTCATATGGGTTATATGCTTATACGTGAGAGATTGTCTGAACTGCAGgtttgtttttgtaaaccatgtgatcttctgaatgaaacttactggatttcttttacagagcttgatcagttttatcactgcttggttgtttttatgtgagagtgtgccatgatcttgtttctgttccttttgtatgtacag
species | Zea mays |
transcript | GRMZM2G028096_T01 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: AACTTCATATGGGTTATATGCTTATACGTGAGAGATTGTCTGAACTGCAG GAAGAGAAGAACAAAAAACGGAAGCTAGACCGAGCTGAGTATGACAGAAGEST: gi|166555935|gb|EG131352.1|EG131352
genomic: AACTTCATATGGGTTATATGCTTATACGTGAGAGATTGTCTGAACTGCAGgtttgttttt ... gtatgtacagGAAGAGAAGAACAAAAAACGGAAGCTAGACCGAGCTGAGTATGACAGAAG
EST: AACTTCATATGGGTTATATGCTTATACGTGAGAGATTGTCTGAACTGCAG GAAGAGAAGAACAAAAAACGGAAGCTAGACCGAGCEST: gi|60347441|gb|DN214414.1|DN214414
genomic: AACTTCATATGGGTTATATGCTTATACGTGAGAGATTGTCTGAACTGCAGgtttgttttt ... gtatgtacagGAAGAGAAGAACAAAAAACGGAAGCTAGACCGAGC
EST: AACTTCATATGGGTTATATGCTTATACGTGAGAGATTGTCTGAACTGCAG GAAGAGAAGAACAAAAAACGGAAGCTAGACCGAGCTGAGTATGACAGAAG
genomic: AACTTCATATGGGTTATATGCTTATACGTGAGAGATTGTCTGAACTGCAGgtttgttttt ... gtatgtacagGAAGAGAAGAACAAAAAACGGAAGCTAGACCGAGCTGAGTATGACAGAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGACCGTCGCTTGGCAGATCATTTTGGAGGGAAACTTCATATGGGTTATATGCTTATACGTGAGAGATTGTCTGAACTGCAGgtttgtttttgtaaaccatgtgatcttctgaatgaaacttactggatttcttttacagagcttgatcagttttatcactgcttggttgtttttatgtgagagtgtgccatgatcttgtttctgttccttttgtatgtacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG