1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GCATATGAGAAGAAGACAACTCCACATTGGATATATGATCTTGGCCGGAAGAGGAATTTTGCTCAGgttaatctgtactagatttttagtttcaagaacttctgtcaattatttgctcgttttataatagtcaggcaccagcgtataactttattactgcatgtga...
species | Zea mays |
transcript | GRMZM2G027307_T01 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: CAACTCCACATTGGATATATGATCTTGGCCGGAAGAGGAATTTTGCTCAG GTTTTTGGAAATGACAGAAAATATTGGTTCATCCCTGCATATTCAGAAGAGEST: gi|26455295|gb|CA826878.1|CA826878
genomic: CAACTCCACATTGGATATATGATCTTGGCCGGAAGAGGAATTTTGCTCAGgttaatctgt ... ttgttatcagGTTTTTGGAAATGACAGAAAATATTGGTTCATCCCTGCATATTCAGAAGAG
EST: CAACTCCACATTGGATATATGATCTTGGCCGGAAGAGGAATTTTGCTCAG GTTTTTGGAAATGACAGAAAATATTGGTTCATCCCTGCATATTCAGAAGAGEST: gi|149110923|gb|EE294421.2|EE294421
genomic: CAACTCCACATTGGATATATGATCTTGGCCGGAAGAGGAATTTTGCTCAGgttaatctgt ... ttgttatcagGTTTTTGGAAATGACAGAAAATATTGGTTCATCCCTGCATATTCAGAAGAG
EST: CAACTCCACATTGGATATATGATCTTGGCCGGAAGAGGAATTTTGCTCAG GTTTTTGGAAATGACAGAAAATATTGGTTCATCCCTGCATATTCAGAAGAGEST: gi|89250234|gb|DY622020.1|DY622020
genomic: CAACTCCACATTGGATATATGATCTTGGCCGGAAGAGGAATTTTGCTCAGgttaatctgt ... ttgttatcagGTTTTTGGAAATGACAGAAAATATTGGTTCATCCCTGCATATTCAGAAGAG
EST: CAACTCCACATTGGATATATGATCTTGGCCGGAAGAGGAATTTTGTTCAG GTTTTTGGAAATAACAGAAAATATTGGTTCATCCCTGCATATTCAGAAGAGEST: gi|148933152|gb|EC876791.2|EC876791
genomic: CAACTCCACATTGGATATATGATCTTGGCCGGAAGAGGAATTTTGCTCAGgttaatctgt ... ttgttatcagGTTTTTGGAAATGACAGAAAATATTGGTTCATCCCTGCATATTCAGAAGAG
EST: CAACTCCACATTGGATATATGATCTTGGCCGGAAGAGGAATTTTGCTCAG GTTTTTGGAAATGACAGAAAATATTGGTTCATCCCTGCATATTCAGAAGAGEST: gi|89106782|gb|DY576999.1|DY576999
genomic: CAACTCCACATTGGATATATGATCTTGGCCGGAAGAGGAATTTTGCTCAGgttaatctgt ... ttgttatcagGTTTTTGGAAATGACAGAAAATATTGGTTCATCCCTGCATATTCAGAAGAG
EST: CAACTCCACATTGGATATATGATCTTGGCCGGAAGAGGAATTTTGCTCAG GTTTTTGGAAATGACAGAAAATATTGGTTCATCCCTGCATATTCAGAAGAGEST: gi|50326450|gb|CO521576.1|CO521576
genomic: CAACTCCACATTGGATATATGATCTTGGCCGGAAGAGGAATTTTGCTCAGgttaatctgt ... ttgttatcagGTTTTTGGAAATGACAGAAAATATTGGTTCATCCCTGCATATTCAGAAGAG
EST: CAACTCCACATTGGATATATGATCTTGGCCGGAAGAGGAATTTTGCTCAG GTTTTTGGAAATGACAGAAAATATTGGTTCATCCCTGCATATTCAGAAGAGEST: gi|61119340|gb|DN560301.1|DN560301
genomic: CAACTCCACATTGGATATATGATCTTGGCCGGAAGAGGAATTTTGCTCAGgttaatctgt ... ttgttatcagGTTTTTGGAAATGACAGAAAATATTGGTTCATCCCTGCATATTCAGAAGAG
EST: CAACTCCACATTGGATATATGATCTTGGCCGGAAGAGGAATTTTGCTCAG GTTTTTGGAAATGACAGAAAATATTGGTTCATCCCTGCATATTCAGAAGAGEST: gi|71306346|gb|DR789325.1|DR789325
genomic: CAACTCCACATTGGATATATGATCTTGGCCGGAAGAGGAATTTTGCTCAGgttaatctgt ... ttgttatcagGTTTTTGGAAATGACAGAAAATATTGGTTCATCCCTGCATATTCAGAAGAG
EST: CAACTCCACATTGGATATATGATCTTGGCCGGAAGAGGAATTTTGCTCAG GTTTTTGGAAATGACAGAAAATATTGGTTCATCCCTGCATATTCAGAAGAGEST: gi|21390493|gb|BQ528542.1|BQ528542
genomic: CAACTCCACATTGGATATATGATCTTGGCCGGAAGAGGAATTTTGCTCAGgttaatctgt ... ttgttatcagGTTTTTGGAAATGACAGAAAATATTGGTTCATCCCTGCATATTCAGAAGAG
EST: CAACTCCACATTGGATATATGATCTTGGCCGGAAGAGGAATTTTGCTCAG GTTTTTGGAAATGACAGAAAATATTGGTTCATCCCTGCATATTCAGAAGAGEST: gi|5917413|gb|AW054204.1|AW054204
genomic: CAACTCCACATTGGATATATGATCTTGGCCGGAAGAGGAATTTTGCTCAGgttaatctgt ... ttgttatcagGTTTTTGGAAATGACAGAAAATATTGGTTCATCCCTGCATATTCAGAAGAG
EST: CAACTCCACATTGGATATATGATCTTGGCCGGAAGAGGAATTTTGCTCAG GTTTTTGGAAATGACAGAAAATATTGGTTCATCCCTGCATATTCAGAAGAGEST: gi|101399436|gb|EB821590.1|EB821590
genomic: CAACTCCACATTGGATATATGATCTTGGCCGGAAGAGGAATTTTGCTCAGgttaatctgt ... ttgttatcagGTTTTTGGAAATGACAGAAAATATTGGTTCATCCCTGCATATTCAGAAGAG
EST: TTGGCCGGAAGAGGAATTTTGTTCAG GTTTTGGGAAATGACAGAAAATATTGGTTCATCCCTGCATATTCAGAAGAGEST: gi|89106688|gb|DY576905.1|DY576905
genomic: TTGGCCGGAAGAGGAATTTTGCTCAGgttaatctgt ... ttgttatcagGTTTTTGGAAATGACAGAAAATATTGGTTCATCCCTGCATATTCAGAAGAG
EST: CAACTCCACATTGGATATATGATCTTGGCCGGAAGAGGAATTTTGCTCAG GTTTTTGGAAATGACAGAAAATATTGGTTCATCCCTGCATATTCAGAAGAGEST: gi|110220233|gb|EC902131.1|EC902131
genomic: CAACTCCACATTGGATATATGATCTTGGCCGGAAGAGGAATTTTGCTCAGgttaatctgt ... ttgttatcagGTTTTTGGAAATGACAGAAAATATTGGTTCATCCCTGCATATTCAGAAGAG
EST: TTGGCCGGAAGAGGAATTTTGTTCAG G-TTTTGGAAATGACAAGAAAATAATGGTTCATCCCTCCATATTCAGAAGAEST: gi|149072485|gb|EE160763.2|EE160763
genomic: TTGGCCGGAAGAGGAATTTTGCTCAGgttaatctgt ... ttgttatcagGTTTTTGGAAATGAC-AGAAAATATTGGTTCATCCCTGCATATTCAGAAGA
EST: CAACTCCACATTGGATATATGATCTTGGCCGGAAGAGGAATTTTGCTCAG GTTTTTGGAAATGACAGAAAATATTGGTTCATCCCTGCATATTCAGAAGAG
genomic: CAACTCCACATTGGATATATGATCTTGGCCGGAAGAGGAATTTTGCTCAGgttaatctgt ... ttgttatcagGTTTTTGGAAATGACAGAAAATATTGGTTCATCCCTGCATATTCAGAAGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCATATGAGAAGAAGACAACTCCACATTGGATATATGATCTTGGCCGGAAGAGGAATTTTGCTCAGgttaatctgtactagatttttagtttcaagaacttctgtcaattatttgctcgttttataatagtcaggcaccagcgtataactttattactgcatgtga
- - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - AGAGGA