1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TGGTGTAGATCTTGCCAGGCAGCTCATAACTTCTCTGTATAATGTGCTAGATAGCTGTGGGAGTGTCAGAATCTCATTCTCTCCGAGAACACCATGGAAGgtatggtatttggcagttctttctatagtacaagttggttggcttgacatttcaattgtctgctagcag
species | Zea mays |
transcript | GRMZM2G026900_T02 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: ATAGCTGTGGGAGTGTCAGAATCTCATTCTCTCCGAGAACACCATGGAAG GTTGCTGATACTATATTTAAAGAATTTGCTGGACATCCCAAGGTCTATATTEST: gi|71329061|gb|DR801238.1|DR801238
genomic: ATAGCTGTGGGAGTGTCAGAATCTCATTCTCTCCGAGAACACCATGGAAGgtatggtatt ... ctgctagcagGTTGCTGATACTATATTTAAAGAATTTGCTGGACATCCCAAGGTCTATATT
EST: ATAGCTGTGGGAGTGTCAGAATCTCATTCTCTCCGAGAACACCATGGAGG GTTGCTGATACTATATTTAEST: gi|32929458|gb|CF034270.1|CF034270
genomic: ATAGCTGTGGGAGTGTCAGAATCTCATTCTCTCCGAGAACACCATGGAAGgtatggtatt ... ctgctagcagGTTGCTGATACTATATTTA
EST: ATAGCTGTGGGAGTGTCAGAATCTCATTCTCTCCGAGAACACCATGGAAG GTTGCTGATACTATATTTAAAGAATTTGCTGGACATCCCAAGGTCTATATTEST: gi|211458184|gb|FL467236.1|FL467236
genomic: ATAGCTGTGGGAGTGTCAGAATCTCATTCTCTCCGAGAACACCATGGAAGgtatggtatt ... ctgctagcagGTTGCTGATACTATATTTAAAGAATTTGCTGGACATCCCAAGGTCTATATT
EST: ATAGCTGTGGGAGTGTCAGAATCTCATTCTCTCCGAGAACACCATGGAAG GTTGCTGATACTATATTTAAAGAATTTGCTGGACATCCCAAGGTCTATATT
genomic: ATAGCTGTGGGAGTGTCAGAATCTCATTCTCTCCGAGAACACCATGGAAGgtatggtatt ... ctgctagcagGTTGCTGATACTATATTTAAAGAATTTGCTGGACATCCCAAGGTCTATATT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGTGTAGATCTTGCCAGGCAGCTCATAACTTCTCTGTATAATGTGCTAGATAGCTGTGGGAGTGTCAGAATCTCATTCTCTCCGAGAACACCATGGAAGgtatggtatttggcagttctttctatagtacaagttggttggcttgacatttcaattgtctgctagcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG