Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTGAATCTTGCTTCTCAGTGTCTACAATATGAGCCAAGAGATCGTCCTGACATAAAAAAGTTGGTTTCCATTCTGGAGCCTTTGCAGAAAAAAATAGAGgtaaccatgtttattcctctttatttcatatttgactcggtaaaagtatttgtgaaaggagtatatttaatgtcctagcatcacactggttcttgctaat...

Basic information

species Zea mays
transcript GRMZM2G026767_T03
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G026767_T01 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os10g39670.1 (Oryza sativa), 5'ss of exon 6
GGTGAATCTTGCTTCTCAGTGTCTACAATATGAGCCAAGAGATCGTCCTGACATAAAAAAGTTGGTTTCCATTCTGGAGCCTTTGCAGAAAAAAATAGAGgtaaccatgtttattcctctttatttcatatttgactcggtaaaagtatttgtgaaaggagtatatttaatgtcctagcatcacactggttcttgctaat-----
|||| ||||||||||  | ||  |||| ||||| ||||||||| | ||||| || ||||||||||||||||||||  |||||||||| | ||||  |||||||   |   || ||   ||  ||||  | |||| |   ||  |  |||   |  ||| || || ||  |  |   |  || |  ||      |  |  |     
GGTGGATCTTGCTTCAAAATGCTTACAGTATGAACCAAGAGATAGGCCTGATATTAAAAAGTTGGTTTCCATTCTTCAGCCTTTGCAAACAAAATCAGAGgtattaacacttcttttgctc-attttttgtttgtc---gtggagatatggatataagtag-attttgcaaattgcaatatgagtctatgatatatttgtctgga
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76937605|gb|DV175198.1|DV175198
EST:     ACATAAAAAAGTTGGTTTCCATTCTGGAGCCTTTGCAGNNNNNNNTAGAG                         GTACCGTCCTATGTGATGCTTGGAATTGCAAAGC
genomic: ACATAAAAAAGTTGGTTTCCATTCTGGAGCCTTTGCAGAAAAAAATAGAGgtaaccatgt ... tatggaacagGTACCGTCCTATGTGATGCTTGGAATTGCAAAGC
EST: gi|76937335|gb|DV175108.1|DV175108
EST:     ACATAAAAAAGTTGGTTTCCATTCTGGAGCCTTTGCAGNNNNNNNTAGAG                         GTACCGTCCTATGTGATGCTTGGAATTGCAAAGCCAGTGGAAGAACCACAG
genomic: ACATAAAAAAGTTGGTTTCCATTCTGGAGCCTTTGCAGAAAAAAATAGAGgtaaccatgt ... tatggaacagGTACCGTCCTATGTGATGCTTGGAATTGCAAAGCCAGTGGAAGAACCACAG