1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' |
GAATGGTCTACTGTCAACACCTGCTGTATCTGCTGTAATTCGTAAAAGAAAAgtatgctttggatcttctataaattaattatgtggatgactatccactttgtccattttttttttatttttgtatggtttctatattttttag
species | Zea mays |
transcript | GRMZM2G025854_T03 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: ATGGTCTACTGTCAACACCTGCTGTATCTGCTGTAATTCGTAAAAGAAAA GCCAATGGCGGCTTTATCATGAGTGCAAGCCATAATCCCAG-TGGAACAGAEST: gi|211022165|gb|FL153038.1|FL153038
genomic: ATGGTCTACTGTCAACACCTGCTGTATCTGCTGTAATTCGTAAAAGAAAAgtatgctttg ... tattttttagGCCAATGGCGGCTTTATCATGAGTGCAAGCCATAATCC-AGGTGGACCAGA
EST: ATGGTCTACTGTCAACACCTGCTGTATCTGCTGTAATTCGTAAAAGAAAA GCCAATGGCGGCTTTATCATGAGTGCAAGCCATAATCCAGGTGGACCAGACEST: gi|211456113|gb|FL153034.1|FL153034
genomic: ATGGTCTACTGTCAACACCTGCTGTATCTGCTGTAATTCGTAAAAGAAAAgtatgctttg ... tattttttagGCCAATGGCGGCTTTATCATGAGTGCAAGCCATAATCCAGGTGGACCAGAC
EST: ATGGTCTACTGTCAACACCTGCTGTATCTGCTGTAATTCGTAAAAGAAAA GCCAATGGCGGCTTTATCATGAGTGCAAGCCATAATCCAGGTGGACCAGACEST: gi|211024619|gb|FL153052.1|FL153052
genomic: ATGGTCTACTGTCAACACCTGCTGTATCTGCTGTAATTCGTAAAAGAAAAgtatgctttg ... tattttttagGCCAATGGCGGCTTTATCATGAGTGCAAGCCATAATCCAGGTGGACCAGAC
EST: ATGGTCTACTGTCAACACCTGCTGTATCTGCTGTAATTCGTAAAAGAAAA GC-AATGGCGGCTTEST: gi|211456114|gb|FL153035.1|FL153035
genomic: ATGGTCTACTGTCAACACCTGCTGTATCTGCTGTAATTCGTAAAAGAAAAgtatgctttg ... tattttttagGCCAATGGCGGCTT
EST: ATGGTCTACTGTCAACACCTGCTGTATCTGCTGTAATTCGTAAAAGAAAA GCCAATGGCGGCTTTATCATGAGTGCAAGCCATAATCCAGGTGGACCAGACEST: gi|50333167|gb|CO528293.1|CO528293
genomic: ATGGTCTACTGTCAACACCTGCTGTATCTGCTGTAATTCGTAAAAGAAAAgtatgctttg ... tattttttagGCCAATGGCGGCTTTATCATGAGTGCAAGCCATAATCCAGGTGGACCAGAC
EST: ATGGTCTACTGTCAACACCTGCTGTATCTGCTGTAATTCGTAAAAGAAAA GCCAATGGCGGCTTTATCATGAGTGCAAGCCATAATCCAGGTGGACCAGACEST: gi|211022178|gb|FL153051.1|FL153051
genomic: ATGGTCTACTGTCAACACCTGCTGTATCTGCTGTAATTCGTAAAAGAAAAgtatgctttg ... tattttttagGCCAATGGCGGCTTTATCATGAGTGCAAGCCATAATCCAGGTGGACCAGAC
EST: TGGTCTACTGGTCA-CACCTGCTGTATCTGCTGTAATTCGTAAAAGAAAA GGCCAATGGCGGCTTTATCEST: gi|211022175|gb|FL153048.1|FL153048
genomic: TGGTCTACTG-TCAACACCTGCTGTATCTGCTGTAATTCGTAAAAGAAAAgtatgctttg ... tattttttagG-CCAATGGCGGCTTTATC
EST: ATGGTCTACTGTCAACACCTGCTGTATCTGCTGTAATTCGTNAAAGAAAA GCCA-TGGCGGCTTTATCATGAGTGCAAGCCCATA-TCCAGGTGGACCAGAEST: gi|211022168|gb|FL153041.1|FL153041
genomic: ATGGTCTACTGTCAACACCTGCTGTATCTGCTGTAATTCGTAAAAGAAAAgtatgctttg ... tattttttagGCCAATGGCGGCTTTATCATGAGTGCAAGCC-ATAATCCAGGTGGACCAGA
EST: ATGGTCTACTGTCAACACCTGCTGTATCTGCTGTAATTCGTAAAAGAAAA GCCAATGGCGGCTTTATCATGAGTGCAAGCCATAATCCAGGTGGACCAGACEST: gi|32943498|gb|CF048317.1|CF048317
genomic: ATGGTCTACTGTCAACACCTGCTGTATCTGCTGTAATTCGTAAAAGAAAAgtatgctttg ... tattttttagGCCAATGGCGGCTTTATCATGAGTGCAAGCCATAATCCAGGTGGACCAGAC
EST: ATGGTCTACTGTCAACACCTGCTGTATCTGCTGTAATTCGTAAAAGAAAA GCCAATGGCGGCTTTATCATGAGTGCAAGCCATAATCCAGGTGGACCAGAC
genomic: ATGGTCTACTGTCAACACCTGCTGTATCTGCTGTAATTCGTAAAAGAAAAgtatgctttg ... tattttttagGCCAATGGCGGCTTTATCATGAGTGCAAGCCATAATCCAGGTGGACCAGAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAATGGTCTACTGTCAACACCTGCTGTATCTGCTGTAATTCGTAAAAGAAAAgtatgctttggatcttctataaattaattatgtggatgactatccactttgtccattttttttttatttttgtatggtttctatattttttag
- - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - AAGAAA