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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTATCTGTGAAATCTGGTTTGCCATGTCTTGGATTCTTGATCAATTCCCAAAGTGGTTCCCTATTGAGAGAGAGACTTACCTAGACCGGCTGTCACTGAGgttagttgctgttgccacctactaatattagccttctcttcctgttgttttgagactaattacttgtatggatag

Basic information

species Zea mays
transcript GRMZM2G025231_T01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G025231_T02 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os07g24190.1 (Oryza sativa), 5'ss of exon 6
TTATCTGTGAAATCTGGTTTGCCATGTCTTGGATTCTTGATCAATTCCCAAAGTGGTTCCCTATTGAGAGAGAGACTTACCTAGACCGGCTGTCACTGAGgttagttgctgttgccacctactaatattagccttc--tcttcctgttgttttgagactaattacttgtatggatag
| || |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||| || ||  || || ||||||| ||| ||||| | | |||   ||| | |   ||  || | |||   |    |||||||||  |||  |  ||||
TAATTTGTGAAATCTGGTTTGCCATGTCTTGGATTCTTGATCAATTCCCCAAGTGGTTTCCTATCGAGAGAGAGACTTACCTTGATCGATTGACATTGAGgttggttactgttactagctaggtatacttgttatccatcattctgaattaccaagactaattgtttgcttttatag

upper sequence: GRMZM2G025231_T02 (Zea mays), 5'ss of exon 6
lower sequence: Vv03s0038g04250.t01 (Vitis vinifera), 5'ss of exon 6
TTATCTGTGAAATCTGGTTTGCCATGTCTTGGATTCTTGATCAATTCCCAAAGTGGTTCCCTATTGAGAGAGAGACTTACCTAGACCGGCTGTCACTGAGgttagttgctgttgccacctactaatattagccttctcttcctgttgt-----tttgagactaattacttgtatggatag------
| |||||||| || ||||||||||| || |||||||||||||| || ||||| ||| |||| ||||| || || ||||| |||||| |||||||| |||||| ||| | |    | || |     | |  || ||   |||||| |       | || |  ||||  ||  ||  | ||       
TGATCTGTGAGATTTGGTTTGCCATTTCATGGATTCTTGATCAGTTTCCAAAATGGCTCCCAATTGACAGGGAAACTTATCTAGACAGGCTGTCATTGAGgtcagt-gtttagcctacttcagtttctgtgcattaatttcctggtaggtaaatctgtgtttaatatctaataatggtatactcag

upper sequence: GRMZM2G025231_T02 (Zea mays), 5'ss of exon 6
lower sequence: Vv18s0122g00120.t01 (Vitis vinifera), 5'ss of exon 6
TTATCTGTGAAATCTGGTTTGCCATGTCTTGGATTCTTGATCAATTCCCAAAGTGGTTCCCTATTGAGAGAGAGACTTACCTAGACCGGCTGTCACTGAGgttagt----tgctgttgccacctactaatattagccttc--tcttcctgttgttttga----gactaattacttgta-tggatag----------------
| ||||||||  ||||||||||  | || |||||||||||||| ||||| |||||| |||| ||||| || || ||||| |||||| || ||||  |||||| |||    |||      ||| |  | ||  |||       ||   ||||||  ||||    || |  || ||| |  | | | |                
TCATCTGTGAGGTCTGGTTTGCTCTTTCATGGATTCTTGATCAGTTCCCGAAGTGGCTCCCAATTGACAGGGAAACTTATCTAGACAGGTTGTCCTTGAGgtgagtactctgccaacttcacgtgttcatgctagttcatagtcaggctgttggattgatttagaatcctttcttattcttgtttgtctgtttctttgtcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211308258|gb|FL341177.1|FL341177
EST:     AAGTGGTTCCCTATTGAGAGAGAGACTTACCTAGACCGGCTGTCACTGAG                         GTTCGACAAGGAAGGCCAGCCATCTCAACTTGCTCCAATTGATTTCTTTGT
genomic: AAGTGGTTCCCTATTGAGAGAGAGACTTACCTAGACCGGCTGTCACTGAGgttagttgct ... gtatggatagGTTCGACAAGGAAGGCCAGCCATCTCAACTTGCTCCAATTGATTTCTTTGT