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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCTTGAGAGCAAGATAGCAGAGGCCAAGCAGAAAAAGGATACGCTTAAAGCTCGTGCTCAATCAGCAAAgtatgcatttattatttcttggttactttttgtgatatgtttctttgtgctgtggacacagacaaatgtggatcttgtttcacttcag

Basic information

species Zea mays
transcript GRMZM2G024607_T02
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G024607_T02 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os01g67000.1 (Oryza sativa), 5'ss of exon 7
GTTCTTGAGAGCAAGATAGCAGAGGCCAAGCAGAAAAAGGATACGCTTAAAGCTCGTGCTCAATCAGCAAAgtatgcatttattatttcttggttactttttg-tgatatgtttctttg--tgctgtggac-----acaga-caaatgtggatcttgtttcacttcag
|||||||| ||||||||||||||||| ||||| ||||| |||||  | ||||| |||||||||||||| |||||||||| ||||  || ||| ||| | ||   | |  | || |||||  |||| ||  |     |||   || |  ||||  || |||  ||| ||
GTTCTTGAAAGCAAGATAGCAGAGGCTAAGCAAAAAAAAGATACCTTAAAAGCCCGTGCTCAATCAGCCAAgtatgcatctattggttgttgattattcttcaattactttttactttggatgctctgagcctctgacacttcacacttggacattcttttccttaag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149100940|gb|EE187037.2|EE187037
EST:     GAGGCCAAGCAGAAAAAGGATACGCTTAAAGCTCGTGCTCAATCAGCAAA                         GACTGCCACAAAAGTGAGCGAAATGTTGGGCAACGTGAATACAAGTAGCGC
genomic: GAGGCCAAGCAGAAAAAGGATACGCTTAAAGCTCGTGCTCAATCAGCAAAgtatgcattt ... ttcacttcagGACTGCCACAAAAGTGAGCGAAATGTTGGGCAACGTGAATACAAGTAGCGC
EST: gi|93014683|gb|EB640203.1|EB640203
EST:     CAATCAGCAAA                         GACTGCCACAAAAGTGAGCGAAATGTTGGGCAACGTGAATACAAGTAGCGC
genomic: CAATCAGCAAAgtatgcattt ... ttcacttcagGACTGCCACAAAAGTGAGCGAAATGTTGGGCAACGTGAATACAAGTAGCGC
EST: gi|71305008|gb|DR788642.1|DR788642
EST:     GAGGCCAAGCAGAAAAAGGATACGCTTAAAGCTCGTGCTCAATCAGCAAA                         GACTGCCACAAAAGTGAGCGAAATGTTGGGCAACGTGAATACAAGTAGCGC
genomic: GAGGCCAAGCAGAAAAAGGATACGCTTAAAGCTCGTGCTCAATCAGCAAAgtatgcattt ... ttcacttcagGACTGCCACAAAAGTGAGCGAAATGTTGGGCAACGTGAATACAAGTAGCGC
EST: gi|211451250|gb|FL460019.1|FL460019
EST:     AAAAAGGATACGCTTAAAGCTCGTGCTCAATCAGCAAA                         GACTGCCACAAAAGTGAGCGAAATGTTGGGCAACGTGAATACAAGTAGCGC
genomic: AAAAAGGATACGCTTAAAGCTCGTGCTCAATCAGCAAAgtatgcattt ... ttcacttcagGACTGCCACAAAAGTGAGCGAAATGTTGGGCAACGTGAATACAAGTAGCGC
EST: gi|94474385|gb|EB703343.1|EB703343
EST:     GAGGCCAAGCAGAAAAAGGATACGCTTAAAGCTCGTGCTCAATCAGCAAA                         GACTGCCACAAAAGTGAGCGAAATGTTGGGCAACGTGAATACAAGTAGCGC
genomic: GAGGCCAAGCAGAAAAAGGATACGCTTAAAGCTCGTGCTCAATCAGCAAAgtatgcattt ... ttcacttcagGACTGCCACAAAAGTGAGCGAAATGTTGGGCAACGTGAATACAAGTAGCGC
EST: gi|60345847|gb|DN212820.1|DN212820
EST:     GAGGCCAAGCAGAAAAAGGATACGCTTAAAGCTCGTGCTCAATCAGCAAA                         GACTGCCACAAAAGTGAGCGAAATGTTGGGCAACGTGAATACAAGTAGCGC
genomic: GAGGCCAAGCAGAAAAAGGATACGCTTAAAGCTCGTGCTCAATCAGCAAAgtatgcattt ... ttcacttcagGACTGCCACAAAAGTGAGCGAAATGTTGGGCAACGTGAATACAAGTAGCGC
EST: gi|18171522|gb|BM341362.1|BM341362
EST:     GAGGCCAAGCAGAAAAAGGATACGCTTAAAGCTCGTGCTCAATCAGCAAA                         GACTGCCACAAAAGTGAGCGAAATGTTGGGCAACGTGAATACAAGTAGCGC
genomic: GAGGCCAAGCAGAAAAAGGATACGCTTAAAGCTCGTGCTCAATCAGCAAAgtatgcattt ... ttcacttcagGACTGCCACAAAAGTGAGCGAAATGTTGGGCAACGTGAATACAAGTAGCGC