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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGCTATGTTGGATCTAGCAAACCGTGCCAAGGgtatgcgacattccacacaccttattacaatgttctcattttcttttgtaaaaccattcaacatgcattattccgccaccgttttaccttatttgatgat...

Basic information

species Zea mays
transcript GRMZM2G023073_T01
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32824511|gb|CD964233.1|CD964233
EST:     GATCCAGCAAACCGTGCCAAGG                         GTGCGGCTGAAGCAATTCTTGCCAAGTCAGAAGCTACTGCTCGTGGAATGA
genomic: GATCTAGCAAACCGTGCCAAGGgtatgcgaca ... tcaacaccagGTGCGGCTGAAGCAATTCTTGCCAAGTCAGAAGCTACTGCTCGTGGAATGA
EST: gi|32806630|gb|CD958864.1|CD958864
EST:     GATCTGGCAAACCGTGCCAAGG                         GTGCGGCTGAAGCAATTCTTGCCAAGTCAGAAGCTACTGCTCGTGGAATGA
genomic: GATCTAGCAAACCGTGCCAAGGgtatgcgaca ... tcaacaccagGTGCGGCTGAAGCAATTCTTGCCAAGTCAGAAGCTACTGCTCGTGGAATGA
EST: gi|32824032|gb|CD963754.1|CD963754
EST:     GATCTAGCAAACCGTGCCAAGG                         GTGCGGCTGAAGCAATTCTTGCCAAGTCAGAAGCTACTGCTCGTGGAATGA
genomic: GATCTAGCAAACCGTGCCAAGGgtatgcgaca ... tcaacaccagGTGCGGCTGAAGCAATTCTTGCCAAGTCAGAAGCTACTGCTCGTGGAATGA
EST: gi|87151830|gb|DY396619.1|DY396619
EST:     GAGCTATGTTGGATCTAGCAAACCGTGCCAAGG                         GTGCGGCTGAAGCAATTCTTGCCAAGTCAGAAGCTACTGCTCGTGGAATGA
genomic: GAGCTATGTTGGATCTAGCAAACCGTGCCAAGGgtatgcgaca ... tcaacaccagGTGCGGCTGAAGCAATTCTTGCCAAGTCAGAAGCTACTGCTCGTGGAATGA
EST: gi|89763664|gb|DY690763.1|DY690763
EST:     GAGCTATGTTGGATCTAGCAAACCGTGCCAAGG                         GTGCGGCTGAAGCAATTCTTGCCAAGTCAGAAGCTACTGCTCGTGGAATGA
genomic: GAGCTATGTTGGATCTAGCAAACCGTGCCAAGGgtatgcgaca ... tcaacaccagGTGCGGCTGAAGCAATTCTTGCCAAGTCAGAAGCTACTGCTCGTGGAATGA
EST: gi|32827014|gb|CD966692.1|CD966692
EST:     GATCTGGCAAACCGTGCCAAGG                         GTGCGGCTGAAGCAATTCTTGCCAAGTCAGAAGCTACTGCTCGTGGAATGA
genomic: GATCTAGCAAACCGTGCCAAGGgtatgcgaca ... tcaacaccagGTGCGGCTGAAGCAATTCTTGCCAAGTCAGAAGCTACTGCTCGTGGAATGA
EST: gi|32826552|gb|CD966230.1|CD966230
EST:     GATCTAGCAAACCGTGCCAAGG                         GTGCGGCTGAAGCAATTCTTGCCAAGTCAGAAGCTACTGCTCGTGGAATGA
genomic: GATCTAGCAAACCGTGCCAAGGgtatgcgaca ... tcaacaccagGTGCGGCTGAAGCAATTCTTGCCAAGTCAGAAGCTACTGCTCGTGGAATGA
EST: gi|32808719|gb|CD960953.1|CD960953
EST:     GATCTAGCAAACCGTGCCAAGG                         GTGCGGCTGAAGCAATTCTTGCCAAGTCAGAAGCTACTGCTCGTGGAATGA
genomic: GATCTAGCAAACCGTGCCAAGGgtatgcgaca ... tcaacaccagGTGCGGCTGAAGCAATTCTTGCCAAGTCAGAAGCTACTGCTCGTGGAATGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAGCTATGTTGGATCTAGCAAACCGTGCCAAGGgtatgcgacattccacacaccttattacaatgttctcattttcttttgtaaaaccattcaacatgcattattccgccaccgttttaccttatttgatgat

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccgccac