1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GCATGCAGTGCTGATGAAGATGGCATGCTTGGTTTTTGTGTTCAAAGTGATGGCAATGGACAAAAgtgcgacttcctttctagaatgttgagatactgagaatccattctaaatatatgttggcttacatagtttctctttatttacatgtag
species | Zea mays |
transcript | GRMZM2G022563_T01 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GAAGATGGCATGCTTGGTTTTTGTGTTCAAAGTGATGGCAATGGACAAAA GCACCTAAGTGCCATAGCGGCTAATGACGAGTCTATCTTGTCCAATACCAAEST: gi|71429948|gb|DR810998.1|DR810998
genomic: GAAGATGGCATGCTTGGTTTTTGTGTTCAAAGTGATGGCAATGGACAAAAgtgcgacttc ... ttacatgtagGCACCTAAGTGCCATAGCGGCTAATGACGAGTCTATCTTGTCCAATACCAA
EST: GAAGATGGCATGCTTGGTTTTTGTGTTCAAAGTGATGGCAATGGACAAAA GCACCTAAGTGCCATAGCGGCTAATGACGAGTCTATCTTGTCCAATACCAAEST: gi|211433129|gb|FL007569.1|FL007569
genomic: GAAGATGGCATGCTTGGTTTTTGTGTTCAAAGTGATGGCAATGGACAAAAgtgcgacttc ... ttacatgtagGCACCTAAGTGCCATAGCGGCTAATGACGAGTCTATCTTGTCCAATACCAA
EST: TTTGTGTTCAAAGTGATGGCAATGGACAAAA GCACCTAAGTGCCATAGCGGCTAATGACGAGTCTATCTTGTCCAATACCAAEST: gi|76291105|gb|DV030673.1|DV030673
genomic: TTTGTGTTCAAAGTGATGGCAATGGACAAAAgtgcgacttc ... ttacatgtagGCACCTAAGTGCCATAGCGGCTAATGACGAGTCTATCTTGTCCAATACCAA
EST: GTTTTTGTG-TCAAAAGTGATGGCAAT-GACAAAAA GCACCTAAGTGCCATAGCGGCTAATGACGAGTCTATCTTGTCCAATACCAEST: gi|89246995|gb|DY618781.1|DY618781
genomic: GTTTTTGTGTTC-AAAGTGATGGCAATGGAC-AAAAgtgcgacttc ... ttacatgtagGCACCTAAGTGCCATAGCGGCTAATGACGAGTCTATCTTGTCCAATACCA
EST: GAAGATGGCATGCTTGGTTTTTGTGTTCAAAGTGATGGCAATGGACAAAA GCACCTAAGTGCCATAGCGGCTAATGACGAGTCTATCTTGTCCAATACCAA
genomic: GAAGATGGCATGCTTGGTTTTTGTGTTCAAAGTGATGGCAATGGACAAAAgtgcgacttc ... ttacatgtagGCACCTAAGTGCCATAGCGGCTAATGACGAGTCTATCTTGTCCAATACCAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCATGCAGTGCTGATGAAGATGGCATGCTTGGTTTTTGTGTTCAAAGTGATGGCAATGGACAAAAgtgcgacttcctttctagaatgttgagatactgagaatccattctaaatatatgttggcttacatagtttctctttatttacatgtag
- - - - - - - - AAGATG