Sequence
atgc intronic sequence ATGC exonic sequenceACAATGCCAGAAGCAGCAGGAGCTGTTGCAGCTGCAGCTGTAGCTGATCGTTTGCATGGGTCAAAGGAGGACCGGAAGCTGGCCATTGTTTTGgtaaatactagttgaaactgtgtgatataattttaaacattcttcatctcttatggtgatttgagtgtttctttgtgatccttttgtcaaaaagataaac...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G021846_T02 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os05g07130.1 (Oryza sativa), 5'ss of exon 6
---ACAATGCCAGAAGCAGCAGGAGCTGTTGCAGCTGCAGCTGTAGCTGATCGTTTGCATGGGTCAAAGGAGGACCGGAAGCTGGCCATTGTTTTGgtaaatactagttgaaa----ctgtgtgatataattttaaacattct-tcatctcttat--ggtgatttgagtgtttctttgtgatcctt-ttgtcaaaaagataaac
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CAGGCCATGCCAGAAGCAGCAGGAGCTGTTGCAGCTGCAGCTGTAGCTGACCGATTGCATGGGTCAAAGGAGGACCGAAAACTAGCTATTGTTTTGgtaaattactgctgtcatttcctctcttatacgactttcagtatttaatcaccagacatcaggagaagccaactttgcttgttggctgttgctatctacc--------
upper sequence: GRMZM2G021846_T02 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os05g07130.2 (Oryza sativa), 5'ss of exon 6
ACAATGCCAGAAGCAGCAGGAGCTGTTGCAGCTGCAGCTGTAGCTGATCGTTTGCATGGGTCAAAGGAGGACCGGAAGCTGGCCATTGTTTTGgtaaatactagttgaaa----ctgtgtgatataattttaaacattct-tcatctcttat--ggtgatttgagtgtttctttgtgatcctt-ttgtcaaaaagataaac
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GCCATGCCAGAAGCAGCAGGAGCTGTTGCAGCTGCAGCTGTAGCTGACCGATTGCATGGGTCAAAGGAGGACCGAAAACTAGCTATTGTTTTGgtaaattactgctgtcatttcctctcttatacgactttcagtatttaatcaccagacatcaggagaagccaactttgcttgttggctgttgctatctacc--------
upper sequence: GRMZM2G021846_T02 (Zea mays), 5'ss of exon 6
lower sequence: Vv06s0004g06920.t01 (Vitis vinifera), 5'ss of exon 6
---ACAATGCCAGAAGCAGCAGGAGCTGTTGCAGCTGCAGCTGTAGCTGATCGTTTGCATGGGTCAAAGGAGGACCGGAAGCTGGCCATTGTTTTGgtaaatactagttgaaactgtgtgatataattttaaacattcttcatctc--ttatggtgatttg--agtgtttctttgtgatccttttgtcaaaaagataaac---
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AATGCAATGCCAGCAGCTGCTGGAGCTGTTGCAGCTGCTGCTGTAGCTGATCAGATGCTTGGTCCGAAAGAGGATAGACATTTGGCAATTGTCCTGgtattttct-gtcattactgattgat-----tttgactattcataattttaatgatgctactctattgacaattcaatgtgattggaat-tcaaacattaaaatcct
upper sequence: GRMZM2G021846_T02 (Zea mays), 5'ss of exon 6
lower sequence: PP1S414_24V6.1 (Physcomitrella patens), 5'ss of exon 6
ACAATGCCAGAAGCAGCAGGAGCTGTTGCAGCTGCAGCTGTAGCTGATCGTTTGCATGGGTCAAAGGAGGACCGGAAGCTGGCCATTGTTTTGgtaaatactagttgaaactgtgtgatataatt---ttaaacattcttcatctctta------tggtgatttgagtgtttctttgtgatccttttgtcaaaaagataaac
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ACAATGCCTGAAGCTGCCGGTGCTGTTGCCGCTGCAGCTGTTGCTGATCGTCTG-ATGG--CGAAAGAACGTCGTCAATTAGCAATCATTCTGgtatatcctcagtttttctggccttcccagttccctcttgcaattttgaaggatcagatcggtagtaaaatgactcagcttttataatttcttatttatt---------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|32926116|gb|CF030928.1|CF030928EST: CTGATCGTTTGCATGGGTCAAAGGAGGACCGGAAGCTGGCCATTGTTTTG GTTGGCCTACCAGCTCGTGGTAAAACCTTCACTGCAGTTAAGCTTACAAGG
genomic: CTGATCGTTTGCATGGGTCAAAGGAGGACCGGAAGCTGGCCATTGTTTTGgtaaatacta ... cccgtatcagGTTGGCCTACCAGCTCGTGGTAAAACCTTCACTGCAGTTAAGCTTACAAGG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ACAATGCCAGAAGCAGCAGGAGCTGTTGCAGCTGCAGCTGTAGCTGATCGTTTGCATGGGTCAAAGGAGGACCGGAAGCTGGCCATTGTTTTGgtaaatactagttgaaactgtgtgatataattttaaacattcttcatctcttatggtgatttgagtgtttctttgtgatccttttgtcaaaaagataaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG