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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGCTGGGAGTAAAGCGAACTGAAAGGGTTCTTCCAACTGGAACCTCATTGACAGTTGTTGGTGAGgtattatttctattatccattggtatgtgctgtgttgcattagtttttcttggcatgtctatatttgtctcttccttttgttctatattattattatatcacatgaacaggccattaaagatgatgttggaactattcgaattcag

Basic information

species Zea mays
transcript GRMZM2G020574_T07
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G020574_T07 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os07g45350.2 (Oryza sativa), 5'ss of exon 6
ATGCTGGGAGTAAAGCGAACTGAAAGGGTTCTTCCAACTGGAACCTCATTGACAGTTGTTGGTGAGgtattatttctattatccattggtatgtgctgtgttgcattagt-ttttcttggcatgtctatatttgtctcttccttttgttctatattattattatatcacatgaacaggccattaaagatgatgttggaactattcgaattcag
||||| ||||| ||| |||||||||||||||||||||||||||| |||||||| |||||||||||||||  |||  ||   |  ||| || ||   ||  |||  || ||    | ||  | | |  ||   |   |||| |||| ||| |   | ||| |||| |   ||||| ||                                    
ATGCTTGGAGTCAAGAGAACTGAAAGGGTTCTTCCAACTGGAACTTCATTGACTGTTGTTGGTGAGgta--attcatagctttaattcgtctgcaatgccttgtgttggtgccctattttcctttacatggctaagtcttgctttcgtttt---tgattcttatgttgtatgaatag------------------------------------

upper sequence: GRMZM2G020574_T07 (Zea mays), 5'ss of exon 6
lower sequence: GLYMA10G02920.1 (Glycine max), 5'ss of exon 6
ATGCTGGGAGTAAAGCGAACTGAAAGGGTTCTTCCAACTGGAACCTCATTGACAGTTGTTGGTGAGgtattatttctattatccattggtatgtgctgtgttgcattagtttttcttggcatgtctatatttgtctcttccttttgttctatattattattatatcacatgaacaggccattaaagatgatgttggaactattcgaattcag
||||| ||||| ||| ||| |||| |||| ||||||  |||||| || ||||| ||||||||||||||| | |   || | || |   | || |||   ||| |       |||||    |          ||||   | ||  ||   |  ||||| |||       || | ||||   ||  |||  ||                     
ATGCTTGGAGTCAAGAGAATTGAACGGGTACTTCCAGTTGGAACTTCCTTGACTGTTGTTGGTGAGgtaatgtaattaatttcaa---gaatatgcctagttac-------tttctcaatag---------tgtcgtatactactgaatttcattataattg----gtattagcagg--gttgcagagtat---------------------

upper sequence: GRMZM2G020574_T07 (Zea mays), 5'ss of exon 6
lower sequence: GLYMA02G16860.1 (Glycine max), 5'ss of exon 6
ATGCTGGGAGTAAAGCGAACTGAAAGGGTTCTTCCAACTGGAACCTCATTGACAGTTGTTGGTGAGgtattatttctattatccattggtatgtgctgtgttgcattagtttttcttggcatgtctatatttgtctcttccttttgttctatattattattatatcacatgaacaggccattaaagatgatgttggaactattcgaattcag
||||| ||||| ||| ||| |||| |||| ||||||  |||||| || ||||| ||||||||||||||| | |   || | || |   | || |||   ||| |       |||||    |   |  ||||   ||     |  |  |   ||  | | ||  |    ||  | ||                                    
ATGCTTGGAGTCAAGAGAATTGAACGGGTACTTCCAGTTGGAACTTCCTTGACTGTTGTTGGTGAGgtaatgtaattaatttcaa---gaatatgcctagttac-------tttctcaatagtgccgtattctactgaatttcattataattagcagtgttgcagagtatatatag------------------------------------

upper sequence: GRMZM2G020574_T07 (Zea mays), 5'ss of exon 6
lower sequence: Vv07s0104g00630.t01 (Vitis vinifera), 5'ss of exon 6
ATGCTGGGAGTAAAGCGAACTGAAAGGGTTCTTCCAACTGGAACCTCATTGACAGTTGTTGGTGAGgtattatttctattatccattggtatgtgctgtgttgcattagtttttcttggcatgtctatatttgtctcttccttttgttctatattattattatatcacatgaacaggccattaaagatgatgttggaactattcgaattcag
||||| ||||| ||||||| |||  |||||||||||||||| ||  | ||||| ||||||||||||||||   ||  |  |          | | |    ||| |    | |||||| ||||   ||||     || || |  ||| | |  | | | |    || |  |    |    |                                
ATGCTCGGAGTGAAGCGAATTGAGCGGGTTCTTCCAACTGGCACACCTTTGACTGTTGTTGGTGAGgtat--gtttcaccac---------tttaccaaattg-acagatatttctttgcatagatataca---ctgtttcaattgctatccactttaagcgcattatgttggtaaaagag-------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71438907|gb|DR819957.1|DR819957
EST:     GAACTGAAAGGGTTCTTCCAACTGGAACCTCATTGACAGTTGTTGGTGAG                         CGACCGCACAAAGGACCCTTTTATGCATCATCAAAGAGCATTGATCAACTT
genomic: GAACTGAAAGGGTTCTTCCAACTGGAACCTCATTGACAGTTGTTGGTGAGgtattatttc ... tcgaattcagCGACCGCACAAAGGACCCTTTTATGCATCATCAAAGAGCATTGATCAACTT