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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGCTGGGAGTAAAGCGAACTGAAAGGGTTCTTCCAACTGGAACCTCATTGACAGTTGTTGGTGAGgtattatttctattatccattggtatgtgctgtgttgcattagtttttcttggcatgtctatatttgtctcttccttttgttctatattattattatatcacatgaacag

Basic information

species Zea mays
transcript GRMZM2G020574_T05
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G020574_T08 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os07g45350.2 (Oryza sativa), 5'ss of exon 6
ATGCTGGGAGTAAAGCGAACTGAAAGGGTTCTTCCAACTGGAACCTCATTGACAGTTGTTGGTGAGgtattatttctattatccattggtatgtgctgtgttgcattagt-ttttcttggcatgtctatatttgtctcttccttttgttctatattattattatatcacatgaacag
||||| ||||| ||| |||||||||||||||||||||||||||| |||||||| |||||||||||||||  |||  ||   |  ||| || ||   ||  |||  || ||    | ||  | | |  ||   |   |||| |||| ||| |   | ||| |||| |   ||||| ||
ATGCTTGGAGTCAAGAGAACTGAAAGGGTTCTTCCAACTGGAACTTCATTGACTGTTGTTGGTGAGgta--attcatagctttaattcgtctgcaatgccttgtgttggtgccctattttcctttacatggctaagtcttgctttcgtttt---tgattcttatgttgtatgaatag

upper sequence: GRMZM2G020574_T08 (Zea mays), 5'ss of exon 6
lower sequence: GLYMA10G02920.1 (Glycine max), 5'ss of exon 6
ATGCTGGGAGTAAAGCGAACTGAAAGGGTTCTTCCAACTGGAACCTCATTGACAGTTGTTGGTGAGgtattatttctattatccattggtatgtgctgtgttgcattagtttttcttggcatgtctatatttgtctcttccttttgttctatattattattatatcacatgaacag
||||| ||||| ||| ||| |||| |||| ||||||  |||||| || ||||| ||||||||||||||| | |   || | || |   | || |||   ||| | ||    |   | |    || ||    ||  | ||| || |  |   |||||  |   |  || |  |    
ATGCTTGGAGTCAAGAGAATTGAACGGGTACTTCCAGTTGGAACTTCCTTGACTGTTGTTGGTGAGgtaatgtaattaatttcaa---gaatatgcctagttacttt---ctcaatagtgtcgtatactactgaat-ttcattataattggtattagcagggttgcagagtat---

upper sequence: GRMZM2G020574_T08 (Zea mays), 5'ss of exon 6
lower sequence: GLYMA02G16860.1 (Glycine max), 5'ss of exon 6
ATGCTGGGAGTAAAGCGAACTGAAAGGGTTCTTCCAACTGGAACCTCATTGACAGTTGTTGGTGAGgtattatttctattatccattggtatgtgctgtgttgcattagtttttcttggcatgtctatatttgtctcttccttttgttctatattattattatatcacatgaacag
||||| ||||| ||| ||| |||| |||| ||||||  |||||| || ||||| ||||||||||||||| | |   || | || |   | || |||   ||| |       |||||    |   |  ||||   ||     |  |  |   ||  | | ||  |    ||  | ||
ATGCTTGGAGTCAAGAGAATTGAACGGGTACTTCCAGTTGGAACTTCCTTGACTGTTGTTGGTGAGgtaatgtaattaatttcaa---gaatatgcctagttac-------tttctcaatagtgccgtattctactgaatttcattataattagcagtgttgcagagtatatatag

upper sequence: GRMZM2G020574_T08 (Zea mays), 5'ss of exon 6
lower sequence: Vv07s0104g00630.t01 (Vitis vinifera), 5'ss of exon 6
ATGCTGGGAGTAAAGCGAACTGAAAGGGTTCTTCCAACTGGAACCTCATTGACAGTTGTTGGTGAGgtattattt-ctattatcc---attggtatgtgctgtgttgcattagtttttcttggcatgtctatatttgtctcttccttttgttctatattattattatatcacatgaacag
||||| ||||| ||||||| |||  |||||||||||||||| ||  | ||||| ||||||||||||||||  ||  | | | | |   ||||  |  |  |   ||||||   | |    ||   | || ||   | ||   |      |   ||| ||  ||  | |            
ATGCTCGGAGTGAAGCGAATTGAGCGGGTTCTTCCAACTGGCACACCTTTGACTGTTGTTGGTGAGgtatgtttcaccactttaccaaattgacagatatttctttgcatagatatacactg---tttcaattgctatccactttaagcgcattatgttggtaaaagag-----------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116816152|gb|EC858858.1|EC858858
EST:     GAACTGAAAGGGTTCTTCCAACTGGAACCTCATTGACAGTTGTTGGTGAG                         GCCATTAAAGATGATGTTGGAACTATTCGAATTCAGCGACCGCACAAAGGA
genomic: GAACTGAAAGGGTTCTTCCAACTGGAACCTCATTGACAGTTGTTGGTGAGgtattatttc ... acatgaacagGCCATTAAAGATGATGTTGGAACTATTCGAATTCAGCGACCGCACAAAGGA
EST: gi|76917346|gb|DV166781.1|DV166781
EST:     GAACTGAAAGGGTTCTTCCAACTGGAACCTCATTGACAGTTGTTGGTGAG                         GCCATTAAAGATGATGTTGGAACTATTCGAATTCAGCGACCGCACCAAGGA
genomic: GAACTGAAAGGGTTCTTCCAACTGGAACCTCATTGACAGTTGTTGGTGAGgtattatttc ... acatgaacagGCCATTAAAGATGATGTTGGAACTATTCGAATTCAGCGACCGCACAAAGGA
EST: gi|148930884|gb|EC873324.2|EC873324
EST:     GAACTGAAAGGGTTCTTCCAACTGGAACCTCATTGACAGTTGTTGGTGAG                         GCCATTAAAGATGATGTTGGAACTATTCGAATTCAGCGACCGCACAAAGGA
genomic: GAACTGAAAGGGTTCTTCCAACTGGAACCTCATTGACAGTTGTTGGTGAGgtattatttc ... acatgaacagGCCATTAAAGATGATGTTGGAACTATTCGAATTCAGCGACCGCACAAAGGA
EST: gi|149102436|gb|EE188206.2|EE188206
EST:     GAACTGAAAGGGTTCTTCCAACTGGAACCTCATTGACAGTTGTTGGTGAG                         GCCATTAAAGATGATGTTGGAACTATTCGAATTCAGCGACCGCACAAAGGA
genomic: GAACTGAAAGGGTTCTTCCAACTGGAACCTCATTGACAGTTGTTGGTGAGgtattatttc ... acatgaacagGCCATTAAAGATGATGTTGGAACTATTCGAATTCAGCGACCGCACAAAGGA