Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTGCTGATCCACTGGTATATAATGACAAGCCCCTTCACAGATGCTTCCACTCGCAAATTCTTCGAAACCCGTAGATACTTTGGCCTAGACCCTGACCAAgtaagtgcctctcaaagttgtttgttgtgctgaatattccatcgcaattttcaacaaaactcccgaatcatatgtaagaggtctgtttcccagatttgttgtgctgaaccctttctttggcag

Basic information

species Zea mays
transcript GRMZM2G019986_T01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G019986_T04 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os04g52370.2 (Oryza sativa), 5'ss of exon 6
TGTGCTGATCCACTGGTATATAATGACAAGCCCCTTCACAGATGCTTCCACTCGCAAATTCTTCGAAACCCGTAGATACTTTGGCCTAGACCCTGACCAAgtaagtgc---ctctcaaagttgtttgttgtgctgaatattccatcgcaatttt-----------caacaaaactcccgaatcatatgtaagaggtctgtttcccagatttgttgtgctgaaccctttctttggcag
 || |  || || |||||||||||||| ||||||||||| ||||    |||||||||||||||||||| ||||| |||||||||| ||||  | |||||||||||  |     ||     || |   ||||| | | |||||||  | |||||            |||||  |  ||| | |||   ||||   || |  |    || ||||    |||||||  |||||| |||||
CGTACCTATTCATTGGTATATAATGACCAGCCCCTTCACCGATGACATCACTCGCAAATTCTTCGAAAGCCGTAAATACTTTGGCTTAGAGGCAGACCAAgtaagatcaagtacttttttttttcatttgtgttaactattccaatggaatttcaacaaaagatccaacaggatcccccattcactagtaat--gtttaataggtaggtttgaacagctgaacattttctt-ggcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71774724|gb|DR972602.1|DR972602
EST:     CTCGCAAATTCTTCGAAACCCGTAGATACTTTGGCCTAGACCCTGACCAA                         GTGACATTTTTCCAACAAGGCACACTTCCATGCGTCTCTGCCGATGGTAGA
genomic: CTCGCAAATTCTTCGAAACCCGTAGATACTTTGGCCTAGACCCTGACCAAgtaagtgcct ... tctttggcagGTGACATTTTTCCAACAAGGCACACTTCCATGCGTCTCTGCCGATGGTAGA
EST: gi|149014076|gb|EE043603.2|EE043603
EST:     CTCGCAAATTCTTCGAAACCCGTAGATACTTTGGCCTAGACCCTGACCAA                         GTGACATTTTTCCCACAAGGCACACTTCCCTGCGTCTCTGCCGATGGTAGA
genomic: CTCGCAAATTCTTCGAAACCCGTAGATACTTTGGCCTAGACCCTGACCAAgtaagtgcct ... tctttggcagGTGACATTTTTCCAACAAGGCACACTTCCATGCGTCTCTGCCGATGGTAGA
EST: gi|78089272|gb|DV517646.1|DV517646
EST:     CTCGCAAATTCTTCGAAACCCGTAGATACTTTGGCCTAGACCCTGACCAA                         GTGACATTTTTCCAANCA-GGCACACTTCCATGCGTCTCTGCCGATGGTA
genomic: CTCGCAAATTCTTCGAAACCCGTAGATACTTTGGCCTAGACCCTGACCAAgtaagtgcct ... tctttggcagGTGACATTTTTCCAA-CAAGGCACACTTCCATGCGTCTCTGCCGATGGTA
EST: gi|148951106|gb|EC896776.2|EC896776
EST:     CTCGCAAATTCTTCGAAACCCGTAGATACTTTGGCCTAGACCCTGACCAA                         GTGACATTTTTCCAACAAGGCACACTTCCATGCGTCTCTGCCGATGGTAGA
genomic: CTCGCAAATTCTTCGAAACCCGTAGATACTTTGGCCTAGACCCTGACCAAgtaagtgcct ... tctttggcagGTGACATTTTTCCAACAAGGCACACTTCCATGCGTCTCTGCCGATGGTAGA
EST: gi|148991365|gb|EE032856.2|EE032856
EST:     CTCGCAAATTCTTCGAAACCCGTAGATACTTTGGCCTAGACCCTGACCCA                         GTGACATTTTTCCAACAAGGCACACTTCCATGCGTCTCTGCCGATGGTAGA
genomic: CTCGCAAATTCTTCGAAACCCGTAGATACTTTGGCCTAGACCCTGACCAAgtaagtgcct ... tctttggcagGTGACATTTTTCCAACAAGGCACACTTCCATGCGTCTCTGCCGATGGTAGA
EST: gi|78112754|gb|DV531148.1|DV531148
EST:     CTCGCAAATTCTTCGAAACCCGTAGATACTTTGGCCTAGACCCTGACCAA                         GTGACATTTTTCCCACAAGGCACACTTCCATGCGTCTCTGCCGATGGTAGA
genomic: CTCGCAAATTCTTCGAAACCCGTAGATACTTTGGCCTAGACCCTGACCAAgtaagtgcct ... tctttggcagGTGACATTTTTCCAACAAGGCACACTTCCATGCGTCTCTGCCGATGGTAGA
EST: gi|148935256|gb|EC879293.2|EC879293
EST:     CTCGCAAATTCTTCGAAACCCGTAGATACTTTGGCCTAGACCCTGACCAA                         GTGACATTTTTTCCAACA-GGCACACTTCCATGCGTCTCTGC
genomic: CTCGCAAATTCTTCGAAACCCGTAGATACTTTGGCCTAGACCCTGACCAAgtaagtgcct ... tctttggcagGTGACATTTTT-CCAACAAGGCACACTTCCATGCGTCTCTGC
EST: gi|149102322|gb|EE188185.2|EE188185
EST:     CTCGCAAATTCTTCGAAACCCGTAGATACTTTGGCCTAGACCCTGACCAA                         GTGACATTTTTCCAACAAGGCACACTTCCATGCGTCTCTGCCGATGGTAGA
genomic: CTCGCAAATTCTTCGAAACCCGTAGATACTTTGGCCTAGACCCTGACCAAgtaagtgcct ... tctttggcagGTGACATTTTTCCAACAAGGCACACTTCCATGCGTCTCTGCCGATGGTAGA