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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTTACATGAGGCAGCTGCTTACAGGCCTGCACTATTGTCATGTCAACCAAGTTCTGCATCGAGATATCAAAGgtcttagctgcaaacatctctgctgagtttttcttgtcttccttattcggtttttatgttttgttgagctaacatactgtatttggtactttgtttgtag

Basic information

species Zea mays
transcript GRMZM2G019267_T02
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G019267_T02 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os01g72790.1 (Oryza sativa), 5'ss of exon 6
TGTTACATGAGGCAGCTGCTTACAGGCCTGCACTATTGTCATGTCAACCAAGTTCTGCATCGAGATATCAAAGgtcttagctgcaaacatctctgctgagtttttcttgtcttccttattcggtttttatgttttgttgagctaacatactgtatttggtactttgtttgtag
||||||||||||||||| |||||||||||||||||||| ||||| || ||||| |||||| ||||||| ||||||     ||  | | || |||  |   || ||| |   |     ||     |    | |||   ||| |||| ||  |||||  | |  ||   ||| ||
TGTTACATGAGGCAGCTACTTACAGGCCTGCACTATTGCCATGTTAATCAAGTGCTGCATAGAGATATTAAAGgttccttctttagagatatcttgt---ttgttcctacttcttgcatgtatatcagttttttccctgaactaatatgttgtatccgttctttc--ttgcag

upper sequence: GRMZM2G019267_T02 (Zea mays), 5'ss of exon 6
lower sequence: GLYMA02G44400.1 (Glycine max), 5'ss of exon 7
TGTTACATGAGGCAGCTGCTTACAGGCCTGCACTATTGTCATGTCAACCAAGTTCTGCATCGAGATATCAAAGgtcttagctgcaaacatctctgctgagtttttcttgtcttccttattcggtttttatgttttgttgagctaacatactgtatttggtactttgtttgtag
||||||||||| |||||  | || || || |||||||||||||| || ||||| || ||||||||||||||||||||  |     || |        || | | |  |  | || | ||      | ||| |||  |       |  |  ||||||| || ||    ||| ||
TGTTACATGAGACAGCTTTTGACGGGGCTTCACTATTGTCATGTAAATCAAGTACTTCATCGAGATATCAAAGgtctgtgtattgaaaa--------gattatgttcttacatcataatgttaaatctatttttcat-------atttgatgtattttgttctg---ttgcag

upper sequence: GRMZM2G019267_T02 (Zea mays), 5'ss of exon 6
lower sequence: GLYMA14G04410.1 (Glycine max), 5'ss of exon 6
TGTTACATGAGGCAGCTGCTTACAGGCCTGCACTATTGTCATGTCAACCAAGTTCTGCATCGAGATATCAAAGgtcttagctgcaaacatctctgctgagtttttcttgtcttccttattcggtttttatgttttgttgagctaacatactgtatttggtactttgtttgtag
||||||||||| |||||  | || || || |||||||||||||| || ||||| || ||||| ||||||||||||||  | |  |||    | || |   |||   |     |  | | ||  || ||||   |  ||||  ||   |  | | ||                 
TGTTACATGAGACAGCTTTTGACTGGGCTTCACTATTGTCATGTAAATCAAGTACTTCATCGTGATATCAAAGgtctgtgtt--aaaagattatgtt---tttacatcagaatgttaaatctattattattcctatttgatgtattttgttctgttgcag-------------

upper sequence: GRMZM2G019267_T02 (Zea mays), 5'ss of exon 6
lower sequence: Vv06s0009g01800.t01 (Vitis vinifera), 5'ss of exon 7
TGTTACATGAGGCAGCTGCTTACAGGCCTGCACTATTGTCATGTCAACCAAGTTCTGCATCGAGATATCAAAGgtcttagctgcaaacatctctgctgagtttttcttgtcttccttattcggtttttatgttttgttgagctaacatactgtatttggtactttgtttgtag
||||| |||||||||||  | || || || ||||| |||||||| || |||||||| ||||| ||||||||||||  || ||  | |||  | |  ||    ||  |||  || ||| ||   |  | | | |  | | ||||    | || |||||| |||           
TGTTATATGAGGCAGCTTTTGACGGGGCTTCACTACTGTCATGTAAATCAAGTTCTTCATCGGGATATCAAAGgttataacta-agacaagttttttg----ttatttgattttcttttttattaatgaggctaagctaagctg---ttctatatttg-tacag---------

upper sequence: GRMZM2G019267_T02 (Zea mays), 5'ss of exon 6
lower sequence: EFJ31297 (Selaginella moellendorffii), 5'ss of exon 5
TGTTACATGAGGCAGCTGCTTACAGGCCTGCACTATTGTCATGTCAACCAAGTTCTGCATCGAGATATCAAAGgtcttagctgcaaacatctctgctgagtttttcttgtcttccttattcggtttttatgttttgttgagctaacatactgtatttggtactttgtttgtag
||||| |||| |||||| || || |||||  |||| |||||| ||||||||||||| ||||| ||||||||||||| |   ||     ||   ||            || ||  || |    |||||   | ||||   ||                                
TGTTATATGAAGCAGCTTCTCACCGGCCTTTACTACTGTCATATCAACCAAGTTCTTCATCGGGATATCAAAGgtcct---tgagtttattcttgtcag--------tgcctggctga---agttttgtggatttgcgcag--------------------------------

upper sequence: GRMZM2G019267_T02 (Zea mays), 5'ss of exon 6
lower sequence: EFJ34303 (Selaginella moellendorffii), 5'ss of exon 4
TGTTACATGAGGCAGCTGCTTACAGGCCTGCACTATTGTCATGTCAACCAAGTTCTGCATCGAGATATCAAAGgtcttagctgcaaacatctctgctgagtttttcttgtcttccttattcggtttttatgttttgttgagctaacatactgtatttggtactttgtttgtag
||||| |||| |||||| || || |||||  |||| |||||| ||||||||||||| ||||| ||||||||||||  |   ||     ||   ||            || ||  || |    |||||   | ||||   ||                                
TGTTATATGAAGCAGCTTCTCACCGGCCTTTACTACTGTCATATCAACCAAGTTCTTCATCGGGATATCAAAGgttct---tgagtttattcttgtcag--------tgcctggctga---agttttgtggatttgcgcag--------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29130258|gb|CB380962.1|CB380962
EST:     AGGCCTGCACTATTGTCATGTCAACCAAGTTCTGCATCGAGATATCAAAG                         GGATCTAACCTTTTGATAGACAATGAGGGTA
genomic: AGGCCTGCACTATTGTCATGTCAACCAAGTTCTGCATCGAGATATCAAAGgtcttagctg ... ttgtttgtagG-ATCTAACCTTTTGATAGACAATGAGGGTA
EST: gi|148931632|gb|EC874770.2|EC874770
EST:     AGGCCTGCACTATTGTCATGTCAACCAAGTTCTGCATCGAGATATCAAAG                         GATCTAACCTTTTGATAGACAATGAGGGTAACTTGAAGCTTGCTGATTTTG
genomic: AGGCCTGCACTATTGTCATGTCAACCAAGTTCTGCATCGAGATATCAAAGgtcttagctg ... ttgtttgtagGATCTAACCTTTTGATAGACAATGAGGGTAACTTGAAGCTTGCTGATTTTG
EST: gi|71774594|gb|DR972472.1|DR972472
EST:     AGGCCTGCACTATTGTCATGTCAACCAAGTTCTGCATCGAGATATCAAAG                         GATCTAACCTTTTGATAGACAATGAGGGTAACTTGAAGCTTGCTGATTTTG
genomic: AGGCCTGCACTATTGTCATGTCAACCAAGTTCTGCATCGAGATATCAAAGgtcttagctg ... ttgtttgtagGATCTAACCTTTTGATAGACAATGAGGGTAACTTGAAGCTTGCTGATTTTG
EST: gi|76914973|gb|DV165773.1|DV165773
EST:     AGGCCTGCACTATTGTCATGTCAACCAAGTTCTGCATCGAGATATCAAAG                         GATCTAACCTTTTGATAGACAATGAGGGTAACTTGAAGCTTGCTGATTTTG
genomic: AGGCCTGCACTATTGTCATGTCAACCAAGTTCTGCATCGAGATATCAAAGgtcttagctg ... ttgtttgtagGATCTAACCTTTTGATAGACAATGAGGGTAACTTGAAGCTTGCTGATTTTG
EST: gi|148962681|gb|EE013583.2|EE013583
EST:     AGGCCTGCACTATTGTCATGTCAACCAAGTTCTGCATCGAGATATCAAAG                         GATCTAACCTTTTGATAGACAATGAGGGTAACTTGAAGCTTGCTGATTTTG
genomic: AGGCCTGCACTATTGTCATGTCAACCAAGTTCTGCATCGAGATATCAAAGgtcttagctg ... ttgtttgtagGATCTAACCTTTTGATAGACAATGAGGGTAACTTGAAGCTTGCTGATTTTG
EST: gi|148946782|gb|EC892051.2|EC892051
EST:     AGGCCTGCACTATTGTCATGTCAACCAAGTTCTGCATCGAGATATCAAAG                         GATCTAACCTTTTGATAAACAATGA
genomic: AGGCCTGCACTATTGTCATGTCAACCAAGTTCTGCATCGAGATATCAAAGgtcttagctg ... ttgtttgtagGATCTAACCTTTTGATAGACAATGA
EST: gi|148938174|gb|EC882457.2|EC882457
EST:     AGGCCTGCACTATTGTCATGTCAACCAAGTTCTGCATCGAGATATCAAAG                         GATCTAACCTTTTGATAGACAATGAGGGTAACTTGAAGCTTGCTGATTT
genomic: AGGCCTGCACTATTGTCATGTCAACCAAGTTCTGCATCGAGATATCAAAGgtcttagctg ... ttgtttgtagGATCTAACCTTTTGATAGACAATGAGGGTAACTTGAAGCTTGCTGATTT
EST: gi|211438454|gb|FL012016.1|FL012016
EST:     AGGCCTGCACTATTGTCATGTCAACCAAGTTCTGCATCGAGATATCAAAG                         GATCTAACCTTTTGATAGACATTGAGGGTAACTTGAAGCTTGCTGATTTTG
genomic: AGGCCTGCACTATTGTCATGTCAACCAAGTTCTGCATCGAGATATCAAAGgtcttagctg ... ttgtttgtagGATCTAACCTTTTGATAGACAATGAGGGTAACTTGAAGCTTGCTGATTTTG
EST: gi|148942610|gb|EC887630.2|EC887630
EST:     AGGCCTGCACTATTGTCATGTCAACCAAGTTCTGCATCGAGATATCAAAG                         GATCTAACCTTTTGATAGACAATGAGGGTAACTTGAAGCTTGCTGATTTTG
genomic: AGGCCTGCACTATTGTCATGTCAACCAAGTTCTGCATCGAGATATCAAAGgtcttagctg ... ttgtttgtagGATCTAACCTTTTGATAGACAATGAGGGTAACTTGAAGCTTGCTGATTTTG