1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
AGGACCTGAAGAAGCTGGAGTCGGAAGTTTCAAACTACAAAGATGATCCACGCCTGCCCTGTGAAATCGCACTGAAGAAAATGGTTGCATTATCTGAAAAgtgcgactgagtttaccgaaatataatgagcatgcatttacctaataactgttacccataaagttgcaaaagaactgaaaattttattggcattcttaattcag
species | Zea mays |
transcript | GRMZM2G019225_T01 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: CGCCTGCCCTGTGAAATCGCACTGAAGAAAATGGTTACATTATCTGAAAA GACCGAGAGAGGTGTEST: gi|88753366|gb|DY537507.1|DY537507
genomic: CGCCTGCCCTGTGAAATCGCACTGAAGAAAATGGTTGCATTATCTGAAAAgtgcgactga ... cttaattcagGACCGAGAGAGGTGT
EST: AAATGGTTGCATTATCTGAAAA GACCGAGAGAGGTGTCTACAGCCTTCTAAGGACAAGAGATGCTATGATGAGEST: gi|60401059|gb|DN233866.1|DN233866
genomic: AAATGGTTGCATTATCTGAAAAgtgcgactga ... cttaattcagGACCGAGAGAGGTGTCTACAGCCTTCTAAGGACAAGAGATGCTATGATGAG
EST: CGCCTGCCCTGTGAAATCGCACTGAAGAAAATGGTTGCATTATCTGAAAA GACCGAGAGAGGTGTCTACAGCCTTCTAAGGACAAGAGATGCTATGATGAG
genomic: CGCCTGCCCTGTGAAATCGCACTGAAGAAAATGGTTGCATTATCTGAAAAgtgcgactga ... cttaattcagGACCGAGAGAGGTGTCTACAGCCTTCTAAGGACAAGAGATGCTATGATGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGGACCTGAAGAAGCTGGAGTCGGAAGTTTCAAACTACAAAGATGATCCACGCCTGCCCTGTGAAATCGCACTGAAGAAAATGGTTGCATTATCTGAAAAgtgcgactgagtttaccgaaatataatgagcatgcatttacctaataactgttacccataaagttgcaaaagaactgaaaattttattggcattcttaattcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA