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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACATCAACTGATTTATTTAAAACTGTCTTTGACCTCATGATATCTGTGACTCTGTTTGTTGGTCGATTTGACATGCGTATGATGCAGgtacatcactttttccctccgccatagtgcctttattgcatggtttctgcttgattccttatgcatttctttccgttataggcacataacagtactgatttatgtattgcactacaaagttattaacagtttttttactaaccttgaccag

Basic information

species Zea mays
transcript GRMZM2G018356_T01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G018356_T02 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os07g04210.1 (Oryza sativa), 5'ss of exon 7
GACATCAACTGATTTATTTAAAACTGTCTTTGACCTCATGATATCTGTGACTCTGTTTGTTGGTCGATTTGACATGCGTATGATGCAGgtacatcactttttccctccgccatagtgcctttattgcatggtttctgcttgattccttatgcatttctttccgttataggcacataacagtactgatttatgtattgcactacaaagttattaacagtttttttactaaccttgaccag
|||||||||||||||||||||||| || |||||||||||| ||||||||||||| || |||||||| ||||||||||| ||||||||||||  | || | ||      |  |      | | | | | |  |||    ||| ||  |  |      |||| | ||||   | | | | |||  ||||                                                    
GACATCAACTGATTTATTTAAAACCGTTTTTGACCTCATGGTATCTGTGACTCTTTTCGTTGGTCGGTTTGACATGCGGATGATGCAGgtatgtgacctgttgaagttgaaacttgttcctcacttcctctttttattttggttgttagttttcagcttttccttat---ctcgtga-agtcatgatcccct-----------------------------------------------

upper sequence: GRMZM2G018356_T02 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA14G08860.1 (Glycine max), 5'ss of exon 6
GACATCAACTGATTTATTTAAAACTGTCTTTGACCTCATGATATCTGTGACTCTGTTTGTTGGTCGATTTGACATGCGTATGATGCAGgtacatcactttttccctccgccatagtgcctttattgcatggtttctgcttgattccttatgcatttctttccgttataggcacataacagtactgatttatgtattgcactacaaagttattaacagtttttttactaaccttgaccag
 |||||  |||||||||| ||||| || ||||||||| |  |||| |||||| | || ||||| || ||||||||||||||||||||||||  |   |||||   | | | || |  | ||  ||  |   || |||   |      | ||  ||| ||    |   | | || || | | |||   ||||    |                                           
AACATCTGCTGATTTATTCAAAACGGTTTTTGACCTCCTAGTATCAGTGACTGTCTTCGTTGGGCGTTTTGACATGCGTATGATGCAGgtaagt--ttttttattttctctat-gcccattgtttatactatt-ctgtcag------tgtgtcttttttataatgtgaagtacttagctg-actatattatactctctg----------------------------------------

upper sequence: GRMZM2G018356_T02 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA17G36310.1 (Glycine max), 5'ss of exon 6
GACATCAACTGATTTATTTAAAACTGTCTTTGACCTCATGATATCTGTGACTCTGTTTGTTGGTCGATTTGACATGCGTATGATGCAGgtacatcactttttccctccgccatagtgcctttattgcatggtttctgcttgattccttatgcatttctttccgttat-aggcacataacagtactgatttatgtattgcactacaaagttattaacagtttttttactaaccttgaccag
 |||||  |||||||||| ||||| || ||||||||| || |||| |||||| | || ||||| || ||||||||||||||||||||||||    |||||||   |   |   | ||||       |||  ||| | ||  ||||  ||||  ||| |||    | | | | || || | | |||   ||||    | |  ||                                     
AACATCTGCTGATTTATTCAAAACAGTTTTTGACCTCCTGGTATCAGTGACTGTCTTCGTTGGGCGTTTTGACATGCGTATGATGCAGgta----actttttttattttctcca-tgcc-------cattatttatact--attctgtatgtttttttttataatgtgaagtacttagctg-actatattataccct-ctgtat------------------------------------

upper sequence: GRMZM2G018356_T02 (Zea mays), 5'ss of exon 3
lower sequence: AT4G23000.1 (Arabidopsis thaliana), 5'ss of exon 6
GACATCAACTGATTTATTTAAAACTGTCTTTGACCTCATGATATCTGTGACTCTGTTTGTTGGTCGATTTGACATGCGTATGATGCAGgtacatcactttttccctc--cgccatagtgcct--ttattgcatggtttctgcttgattccttatgcatttctttccgttataggcacataacagtactgatttatgtattgcactacaaagttattaacagtttttttactaaccttgaccag
 || ||| ||||||| ||||||||||| ||||||||| |  |||| |||||| | ||| |||| || ||||||||||| |||||||||||| |  | || ||        |  ||||   ||  |  ||  ||  || ||| ||   |  ||||  ||| ||||   || ||  |      || |  | |   |||| | |                                          
AACTTCAGCTGATTTGTTTAAAACTGTGTTTGACCTCCTCGTATCAGTGACTGTCTTTCTTGGCCGCTTTGACATGCGAATGATGCAGgtatactatttcttatactgatgtgataggatctgatccttttatctttcctgatttgcttattat--attgctttt--ttgtaa-ctttccccatttttaa---atgtgtag------------------------------------------

upper sequence: GRMZM2G018356_T02 (Zea mays), 5'ss of exon 3
lower sequence: Vv18s0001g11060.t01 (Vitis vinifera), 5'ss of exon 7
GACATCAACTGATTTATTTAAAACTGTCTTTGACCTCATGATATCTGTGACTCTGTTTGTTGGTCGATTTGACATGCGTATGATGCAGgtacatcactttttccctccgccatagtgcctttattgcatggtttctgcttgattccttatgcatttctttccgttataggcacataacagtactgatttatgtattgcactacaaagttattaacagtttttttactaaccttgaccag
 |||||| ||||| | ||||| || |  ||||||||| || |||| || ||| ||||||||||||| ||||||||||| ||||||||||||||  | |           ||| |     | | ||||||  |   || |    |  |  ||   || ||||  ||| |     | ||     ||  ||| |   |  | || |                                    
AACATCAGCTGATCTTTTTAAGACAGCTTTTGACCTCCTGGTATCAGTAACTGTGTTTGTTGGTCGCTTTGACATGCGCATGATGCAGgtaca--att-----------ccaca----ttcttttgcatcatggttgttaacattatggtgtccttttttcttttaaatagcaagaatcactctc-tttctccctctctctgcctc---------------------------------