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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAAgtaagttctgttctctcttggtacaactctctactggttaatgtatttttatctgtttcaatattgggctgcgatgcactatgattataaatatgttgatctgctacatgcgttatccttttctctgtgcaacactcagatttgtgttattatggttaacactcagatttgcactatgttcccag

Basic information

species Zea mays
transcript GRMZM2G018177_T01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G018177_T01 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os01g05490.1 (Oryza sativa), 5'ss of exon 6
AGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAAgtaagttctgttctctcttggtacaactctctactggttaatgtatttttatctgtttcaatattgggctgcgatgcactatgattataaatatgttgatctgctacatgcgttatccttttctctgtgcaacactcagatttgtgttattatggttaacactcagatttgcactatgttcccag
| | ||||||||| ||||  || || ||| ||||||||||||| || ||||| ||||||||||| ||||| || || |||| ||| || || ||||||||||   |  | | ||| || | | | | |      | |||   || ||    |||          ||| | |  | || ||| |     |    ||   ||| ||    |||| | ||   |   ||||  || | ||||| ||||| |  | |                           
AAAGGATCAAGGATTGGACTAATGTGGTTGTTGCCTATGAACCTGTGTGGGCCATTGGAACTGGTAAAGTTGCTACACCAGATCAAGCACAAGAAgtaagtt---tcttatattgata-agcacacaa------agtgttcattcatgaacttc----------tgc-acgttccataattgt-----tacctatgctctagataaaatatcttgtt---taaacaaccatctggtttgtattattgta-tcag--------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18176083|gb|BM351165.1|BM351165
EST:     TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
genomic: TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAAgtaagttctg ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
EST: gi|17931741|gb|BM268701.1|BM268701
EST:     TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
genomic: TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAAgtaagttctg ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
EST: gi|101401985|gb|EB822612.1|EB822612
EST:     TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGGGAAAGATCAATGTCAGCCCTGAGGTC
genomic: TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAAgtaagttctg ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
EST: gi|91056160|gb|EB166578.1|EB166578
EST:     TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
genomic: TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAAgtaagttctg ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
EST: gi|18162555|gb|BM332394.1|BM332394
EST:     TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
genomic: TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAAgtaagttctg ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
EST: gi|211242069|gb|FL120954.1|FL120954
EST:     TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCCTGAGG-ATTGGGGTAAAGATCAATGTCAGCCCTGAGG
genomic: TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAAgtaagttctg ... atgttcccagGTGCACGCCTCCC-TGAGGGATTGGG-TAAAGATCAATGTCAGCCCTGAGG
EST: gi|24766239|gb|CA401394.1|CA401394
EST:     TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
genomic: TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAAgtaagttctg ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
EST: gi|33467983|gb|CF245032.1|CF245032
EST:     TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTT
genomic: TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAAgtaagttctg ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
EST: gi|18168315|gb|BM338155.1|BM338155
EST:     TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
genomic: TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAAgtaagttctg ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
EST: gi|32935495|gb|CF040307.1|CF040307
EST:     TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
genomic: TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAAgtaagttctg ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
EST: gi|14202826|gb|BG836503.1|BG836503
EST:     TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTTGGGTAAAGATCAATGTCAGCCC
genomic: TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAAgtaagttctg ... atgttcccagGTGCACGCCTCCCTGAGGGATT-GGGTAAAGATCAATGTCAGCCC
EST: gi|21626066|gb|BQ620987.1|BQ620987
EST:     TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
genomic: TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAAgtaagttctg ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
EST: gi|30087627|gb|CB885833.1|CB885833
EST:     TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
genomic: TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAAgtaagttctg ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
EST: gi|60352667|gb|DN219640.1|DN219640
EST:     TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
genomic: TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAAgtaagttctg ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
EST: gi|33094781|gb|CF054775.1|CF054775
EST:     TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
genomic: TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAAgtaagttctg ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
EST: gi|16925608|gb|BM078676.1|BM078676
EST:     TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
genomic: TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAAgtaagttctg ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
EST: gi|211239829|gb|FL120936.1|FL120936
EST:     TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
genomic: TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAAgtaagttctg ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
EST: gi|14208462|gb|BG842140.1|BG842140
EST:     TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
genomic: TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAAgtaagttctg ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
EST: gi|18161941|gb|BM331780.1|BM331780
EST:     TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
genomic: TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAAgtaagttctg ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
EST: gi|18165625|gb|BM335464.1|BM335464
EST:     TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
genomic: TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAAgtaagttctg ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
EST: gi|18165365|gb|BM335204.1|BM335204
EST:     TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCTAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
genomic: TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAAgtaagttctg ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
EST: gi|24765545|gb|CA400704.1|CA400704
EST:     TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
genomic: TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAAgtaagttctg ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
EST: gi|76012320|gb|DT939490.1|DT939490
EST:     TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
genomic: TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAAgtaagttctg ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
EST: gi|18173240|gb|BM348628.1|BM348628
EST:     TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
genomic: TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAAgtaagttctg ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
EST: gi|5069936|gb|AI737901.1|AI737901
EST:     TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
genomic: TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAAgtaagttctg ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
EST: gi|31358045|gb|CD442402.1|CD442402
EST:     TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
genomic: TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAAgtaagttctg ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
EST: gi|213175742|gb|FM182722.1|FM182722
EST:     TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
genomic: TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAAgtaagttctg ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
EST: gi|89764158|gb|DY691067.1|DY691067
EST:     TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCACGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
genomic: TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAAgtaagttctg ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
EST: gi|18165667|gb|BM335506.1|BM335506
EST:     TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
genomic: TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAAgtaagttctg ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
EST: gi|76013519|gb|DT940689.1|DT940689
EST:     TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
genomic: TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAAgtaagttctg ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
EST: gi|67020562|gb|CO449311.1|CO449311
EST:     TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTTGAG-T
genomic: TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAAgtaagttctg ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCT-GAGGT
EST: gi|18172926|gb|BM348314.1|BM348314
EST:     TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
genomic: TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAAgtaagttctg ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
EST: gi|31405699|gb|CD484431.1|CD484431
EST:     TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
genomic: TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAAgtaagttctg ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
EST: gi|32908101|gb|CF012914.1|CF012914
EST:     TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
genomic: TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAAgtaagttctg ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
EST: gi|91874218|gb|EB404175.1|EB404175
EST:     TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
genomic: TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAAgtaagttctg ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
EST: gi|7227504|gb|AW566145.1|AW566145
EST:     TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
genomic: TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAAgtaagttctg ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
EST: gi|9731093|gb|BE509845.1|BE509845
EST:     TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
genomic: TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAAgtaagttctg ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
EST: gi|61118536|gb|DN559497.1|DN559497
EST:     TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAAGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
genomic: TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAAgtaagttctg ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
EST: gi|28982480|gb|BQ538137.2|BQ538137
EST:     TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
genomic: TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAAgtaagttctg ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
EST: gi|60341170|gb|DN208143.1|DN208143
EST:     TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
genomic: TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAAgtaagttctg ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
EST: gi|60397817|gb|DN230633.1|DN230633
EST:     TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
genomic: TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAAgtaagttctg ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
EST: gi|211534317|gb|FL091476.1|FL091476
EST:     TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGGTAAAGATCCATGTCAGCCCCTGAG-T
genomic: TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAAgtaagttctg ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCC-TGAGGT
EST: gi|211522699|gb|FL104754.1|FL104754
EST:     TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
genomic: TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAAgtaagttctg ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
EST: gi|18174112|gb|BM349500.1|BM349500
EST:     TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
genomic: TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAAgtaagttctg ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
EST: gi|28909959|gb|CB331185.1|CB331185
EST:     TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAG
genomic: TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAAgtaagttctg ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAG
EST: gi|211002461|gb|FL361134.1|FL361134
EST:     TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
genomic: TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAAgtaagttctg ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
EST: gi|78024857|gb|DV493244.1|DV493244
EST:     TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
genomic: TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAAgtaagttctg ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
EST: gi|213182441|gb|FM190387.1|FM190387
EST:     TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
genomic: TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAAgtaagttctg ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
EST: gi|17929542|gb|BM266502.1|BM266502
EST:     TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
genomic: TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAAgtaagttctg ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
EST: gi|50335056|gb|CO530182.1|CO530182
EST:     TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
genomic: TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAAgtaagttctg ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
EST: gi|18169243|gb|BM339083.1|BM339083
EST:     TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
genomic: TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAAgtaagttctg ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
EST: gi|86468468|gb|DY234838.1|DY234838
EST:     TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
genomic: TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAAgtaagttctg ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
EST: gi|18172280|gb|BM347668.1|BM347668
EST:     TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
genomic: TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAAgtaagttctg ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
EST: gi|18175195|gb|BM350583.1|BM350583
EST:     TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
genomic: TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAAgtaagttctg ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
EST: gi|18169675|gb|BM339515.1|BM339515
EST:     TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
genomic: TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAAgtaagttctg ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
EST: gi|76013518|gb|DT940688.1|DT940688
EST:     TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
genomic: TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAAgtaagttctg ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAAgtaagttctgttctctcttggtacaactctctactggttaatgtatttttatctgtttcaatattgggctgcgatgcactatgattataaatatgttgatctgctacatgcgttatccttttctctgtgcaacactcagatttgtgttattatggttaacactcagatttgcactatgttcccag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTCA