1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
CTGTAAAAGTGGTTTTGGAAGAAACCGTATCACCTACACAGACACGTGCGCCGTGAGTGGCCAAGATCTGAAGACGTATCACAACATGGATGCTATCAATgtaagtcgatacgcattttccggttctgcttctgttctatatttgctccctgtaccgagttcacgcatttttgcag
species | Zea mays |
transcript | GRMZM2G017941_T01 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: CCGTGAGTGGCCAAGATCTGAAGACGTATCACAACATGGATGCTATCAAT GACTTGGTAGTGTCAGGAAAAAACAACCCGAGTGGACAGACTGATGTAATCEST: gi|71329488|gb|DR801466.1|DR801466
genomic: CCGTGAGTGGCCAAGATCTGAAGACGTATCACAACATGGATGCTATCAATgtaagtcgat ... atttttgcagGACTTGGTAGTGTCAGGAAGAACCAACCCGAGTGGACAGACTGATGTAATC
EST: CCGTGAGTGGCCAAGATCTGAAGACGTATCACAACATGGATGCTATCAAT GACTTGGTAGTGTCAGGAAGAACCAACCCGAGTGGACAGACTGATGTAATCEST: gi|211169629|gb|FL169502.1|FL169502
genomic: CCGTGAGTGGCCAAGATCTGAAGACGTATCACAACATGGATGCTATCAATgtaagtcgat ... atttttgcagGACTTGGTAGTGTCAGGAAGAACCAACCCGAGTGGACAGACTGATGTAATC
EST: CCGTGAGTGGCCAAGATCTGAAGACGTATCACAACATGGATGCTATCAAT GACTTGGTAGTGTCAGGAAGAACCAACCCGAGTGGACAGACTGATGTAATCEST: gi|60401365|gb|DN234172.1|DN234172
genomic: CCGTGAGTGGCCAAGATCTGAAGACGTATCACAACATGGATGCTATCAATgtaagtcgat ... atttttgcagGACTTGGTAGTGTCAGGAAGAACCAACCCGAGTGGACAGACTGATGTAATC
EST: CCGTGAGTGGCCAAGATCTGAAGACGTATCACAACATGGATGCTATCAAT GACTTGGTAGTGTCAGGAAGAACCAACCCGAGTGGACAGACTGATGTAATCEST: gi|211171319|gb|FL169525.1|FL169525
genomic: CCGTGAGTGGCCAAGATCTGAAGACGTATCACAACATGGATGCTATCAATgtaagtcgat ... atttttgcagGACTTGGTAGTGTCAGGAAGAACCAACCCGAGTGGACAGACTGATGTAATC
EST: CCGTGAGTGGCCAAGATCTGAAGACGTATCACAACATGGATGCTATCAAT GACTTGGTAGTGTCAGGAAGAACCAACCCGAGTGGACAGACTGATGTAATCEST: gi|7242261|gb|AW574447.1|AW574447
genomic: CCGTGAGTGGCCAAGATCTGAAGACGTATCACAACATGGATGCTATCAATgtaagtcgat ... atttttgcagGACTTGGTAGTGTCAGGAAGAACCAACCCGAGTGGACAGACTGATGTAATC
EST: CCGTGAGTGGCCAAGATCTGAAGACGTATCACAACATGGATGCTATCAAT GACTTGGTAGTGTCAGGAAGAACCAACCCGAGTGGACAGACTGATGTAATCEST: gi|149013784|gb|EE043248.2|EE043248
genomic: CCGTGAGTGGCCAAGATCTGAAGACGTATCACAACATGGATGCTATCAATgtaagtcgat ... atttttgcagGACTTGGTAGTGTCAGGAAGAACCAACCCGAGTGGACAGACTGATGTAATC
EST: CCGTGAGTGGCCAAGATCTGAAGACGTATCACAACATGGATGCTATCAAT GACTTGGTAGTGTCAGGAAGAACCAACCCGAGTGGACAGACTGATGTAATEST: gi|31358873|gb|CD443230.1|CD443230
genomic: CCGTGAGTGGCCAAGATCTGAAGACGTATCACAACATGGATGCTATCAATgtaagtcgat ... atttttgcagGACTTGGTAGTGTCAGGAAGAACCAACCCGAGTGGACAGACTGATGTAAT
EST: CCGTGAGTGGCCAAGATCTGAAGACGTATCACAACATGGATGCTATCAAT GACTTGGTAGTGTCAGGAAGAACCAACCCGAGTGGACAGACTGATGTAATCEST: gi|93281025|gb|EB673289.1|EB673289
genomic: CCGTGAGTGGCCAAGATCTGAAGACGTATCACAACATGGATGCTATCAATgtaagtcgat ... atttttgcagGACTTGGTAGTGTCAGGAAGAACCAACCCGAGTGGACAGACTGATGTAATC
EST: CCGTGAGTGGCCAAGATCTGAAGACGTATCACAACATGGATGCTATCAAT GACTTGGTAGTGTCAGGAAGAACCAACCCGAGTGGACAGACTGATGTAATCEST: gi|71329487|gb|DR801465.1|DR801465
genomic: CCGTGAGTGGCCAAGATCTGAAGACGTATCACAACATGGATGCTATCAATgtaagtcgat ... atttttgcagGACTTGGTAGTGTCAGGAAGAACCAACCCGAGTGGACAGACTGATGTAATC
EST: CCGTGAGTGGCCAAGATCTGAAGACGTATCACAACATGGATGCTATCAAT GACTTGGTAGTGTCAGGAAGAACCAACCCGAGTGGACAGACTGATGTAATCEST: gi|78106618|gb|DV525036.1|DV525036
genomic: CCGTGAGTGGCCAAGATCTGAAGACGTATCACAACATGGATGCTATCAATgtaagtcgat ... atttttgcagGACTTGGTAGTGTCAGGAAGAACCAACCCGAGTGGACAGACTGATGTAATC
EST: CCGTGAGTGGCCAAGATCTGAAGACGTATCACAACATGGATGCTATCAAT GACTTGGTAGTGTCAGGAAGAACCAACCCGAGTGGACAGACTGATGTAATCEST: gi|101399852|gb|EB821772.1|EB821772
genomic: CCGTGAGTGGCCAAGATCTGAAGACGTATCACAACATGGATGCTATCAATgtaagtcgat ... atttttgcagGACTTGGTAGTGTCAGGAAGAACCAACCCGAGTGGACAGACTGATGTAATC
EST: CCGTGAGTGGCCAAGATCTGAAGACGTATCACAACATGGATGCTATCAAT GACTTGGTAGTGTCAGGAAGAACCAACCCGAGTGGACAGACTGATGTAATCEST: gi|211172988|gb|FL169531.1|FL169531
genomic: CCGTGAGTGGCCAAGATCTGAAGACGTATCACAACATGGATGCTATCAATgtaagtcgat ... atttttgcagGACTTGGTAGTGTCAGGAAGAACCAACCCGAGTGGACAGACTGATGTAATC
EST: CCGTGAGTGGCCAAGATCTGAAGACGTATCACAACATGGATGCTATCAAT GACTTGGTAGTGTCAGGAAGAACCTACCCGAGTGGACAGACTGATGTAATCEST: gi|211172990|gb|FL169533.1|FL169533
genomic: CCGTGAGTGGCCAAGATCTGAAGACGTATCACAACATGGATGCTATCAATgtaagtcgat ... atttttgcagGACTTGGTAGTGTCAGGAAGAACCAACCCGAGTGGACAGACTGATGTAATC
EST: CCGTGAGTGGCCAAGATCTGAAGACGTATCACAACATGGATGCTATCAAT GACTTGGTAGTGTCAGGAAGAACCAACCCGAGTGGACAGACTGATGTAATCEST: gi|67024634|gb|CO453383.1|CO453383
genomic: CCGTGAGTGGCCAAGATCTGAAGACGTATCACAACATGGATGCTATCAATgtaagtcgat ... atttttgcagGACTTGGTAGTGTCAGGAAGAACCAACCCGAGTGGACAGACTGATGTAATC
EST: CCGTGAGTGGCCAAGATCTGAAGACGTATCACAACATGGATGCTATCAAT GACTTGGTAGTGTCAGGAAGAACCAACCCGAGTGGACAGACTGATGTAATCEST: gi|13515991|gb|BG518267.1|BG518267
genomic: CCGTGAGTGGCCAAGATCTGAAGACGTATCACAACATGGATGCTATCAATgtaagtcgat ... atttttgcagGACTTGGTAGTGTCAGGAAGAACCAACCCGAGTGGACAGACTGATGTAATC
EST: CCAAGATCTGAAGACGTATCACAACATGGATGCTATCAAT GACTTGGTAGTGTCAGGAAGAACCAACCCGAGTGGACAGACTGATGTAATCEST: gi|149072392|gb|EE160666.2|EE160666
genomic: CCAAGATCTGAAGACGTATCACAACATGGATGCTATCAATgtaagtcgat ... atttttgcagGACTTGGTAGTGTCAGGAAGAACCAACCCGAGTGGACAGACTGATGTAATC
EST: CCGTGAGTGGCCAAGATCTGAAGACGTATCACAACATGGATGCTATCAAT GACTTGGTAGTGTCAGGAAGAACCCACCCGAGTGGACAGACTGATGTAATEST: gi|148982778|gb|EE028604.2|EE028604
genomic: CCGTGAGTGGCCAAGATCTGAAGACGTATCACAACATGGATGCTATCAATgtaagtcgat ... atttttgcagGACTTGGTAGTGTCAGGAAGAACCAACCCGAGTGGACAGACTGATGTAAT
EST: CCGTGAGTGGCCAAGATCTGAAGACGTATCACAACATGGATGCTATCAAT GACTTGGTAGTGTCAGGAAGAACCAACCCGAGTGGACAGACTGATGTAATCEST: gi|37397410|gb|CF636002.1|CF636002
genomic: CCGTGAGTGGCCAAGATCTGAAGACGTATCACAACATGGATGCTATCAATgtaagtcgat ... atttttgcagGACTTGGTAGTGTCAGGAAGAACCAACCCGAGTGGACAGACTGATGTAATC
EST: CCGTGAGTGGCCAAGATCTGAAGACGTATCACAACATGGATGCTATCAAT GACTTGGTAGTGTCAGGAAGAACCAACCCGAGTGGACAGACTGATGTAATC
genomic: CCGTGAGTGGCCAAGATCTGAAGACGTATCACAACATGGATGCTATCAATgtaagtcgat ... atttttgcagGACTTGGTAGTGTCAGGAAGAACCAACCCGAGTGGACAGACTGATGTAATC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTGTAAAAGTGGTTTTGGAAGAAACCGTATCACCTACACAGACACGTGCGCCGTGAGTGGCCAAGATCTGAAGACGTATCACAACATGGATGCTATCAATgtaagtcgatacgcattttccggttctgcttctgttctatatttgctccctgtaccgagttcacgcatttttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA