1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
AGCTGGCAGCTGTGCGCTTGGAGAAAGAGCAGGATAACAGGGCAAGACGTTTTGGTAGTTCAAGCGGTTCTGCCAGCAGTTCGCAGCTCCCACCTGGCAGgtaggagtagttcgctaccttgagttgaagagtctgtagtatgtgattgaccagatttgcgtgcatctttactcag
species | Zea mays |
transcript | GRMZM2G017525_T01 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TTTGGTAGTTCAAGCGGNTCTGCCAGCAGTTCGCAGCTCCCACCTGGCAG GACTTTACCTAAGAGCGGCTCGGCGCGCAACATGTGAAGGCATEST: gi|60396927|gb|DN229746.1|DN229746
genomic: TTTGGTAGTTCAAGCGGTTCTGCCAGCAGTTCGCAGCTCCCACCTGGCAGgtaggagtag ... ctttactcagGACTTTACCTAGGAGCGGCTCGGCGCGCAACATGTGAAGGCAT
EST: TTTGGTAGTTCAAGCGGTTCTGCCAGCAGTTCGCAGCTCCCACCTGGCAG GACTTTACCTAAGAGCGGCTCGGCGCGCAACATGTGAAGGCATGTAGGAATEST: gi|37393909|gb|CF634221.1|CF634221
genomic: TTTGGTAGTTCAAGCGGTTCTGCCAGCAGTTCGCAGCTCCCACCTGGCAGgtaggagtag ... ctttactcagGACTTTACCTAGGAGCGGCTCGGCGCGCAACATGTGAAGGCATGTAGGAAT
EST: TTTGGTAGTTCAAGCGGTTCTGCCAGCAGTTCGCAGCTCCCACCTGGCAG GACTTTACCTAGGAGCGGCTCGGCGCGCAACATGTGAAGGCATGTAGGAATEST: gi|211146570|gb|FL325019.1|FL325019
genomic: TTTGGTAGTTCAAGCGGTTCTGCCAGCAGTTCGCAGCTCCCACCTGGCAGgtaggagtag ... ctttactcagGACTTTACCTAGGAGCGGCTCGGCGCGCAACATGTGAAGGCATGTAGGAAT
EST: TTTGGTAGTTCAAGCGGTTCTGCCAGCAGTTCGCAGCTCCCACCTGGCAG GACTTTACCTAGGAGCGGCTCGGCGCGCAACATGTGAAGGCATGTAGGAATEST: gi|60347061|gb|DN214034.1|DN214034
genomic: TTTGGTAGTTCAAGCGGTTCTGCCAGCAGTTCGCAGCTCCCACCTGGCAGgtaggagtag ... ctttactcagGACTTTACCTAGGAGCGGCTCGGCGCGCAACATGTGAAGGCATGTAGGAAT
EST: TTTGGTAGTTCAAGCGGTTCTGCCAGCAGTTCGCAGCTCCCACCTGGCAG GACTTTACCTAGGAGCGGCTCGGCGCGCAACATGTGAAGGCATGTAGGAATEST: gi|9953958|gb|BE640541.1|BE640541
genomic: TTTGGTAGTTCAAGCGGTTCTGCCAGCAGTTCGCAGCTCCCACCTGGCAGgtaggagtag ... ctttactcagGACTTTACCTAGGAGCGGCTCGGCGCGCAACATGTGAAGGCATGTAGGAAT
EST: TTTGGTAGTTCAAGCGGTTCTGCCAGCAGTTCGCAGCTCCCACCTGGCAG GACTTTACCTAGGAGCGGCTCGGCGCGCAACATGTGAAGGCATGTAGGAATEST: gi|78179137|gb|DV549510.1|DV549510
genomic: TTTGGTAGTTCAAGCGGTTCTGCCAGCAGTTCGCAGCTCCCACCTGGCAGgtaggagtag ... ctttactcagGACTTTACCTAGGAGCGGCTCGGCGCGCAACATGTGAAGGCATGTAGGAAT
EST: TTTGGTAGTTCAAGCGGTTCTGCCAGCAGTTCGCAGCTCCCACCTGGCAG GACTTTACCTAGGAGCGGCTCGGCGCGCAACATGTGAAGGCATGTAGGAATEST: gi|76930458|gb|DV172393.1|DV172393
genomic: TTTGGTAGTTCAAGCGGTTCTGCCAGCAGTTCGCAGCTCCCACCTGGCAGgtaggagtag ... ctttactcagGACTTTACCTAGGAGCGGCTCGGCGCGCAACATGTGAAGGCATGTAGGAAT
EST: TTTGGTAGTTCAAGCGGTTCTGCCAGCAGTTCGCAGCTCCCACCTGGCAG GACTTTACCTAGGAGCGGCTCGGCGCGCAACATGTGAAGGCATGTAGGAATEST: gi|6918473|gb|AW400003.1|AW400003
genomic: TTTGGTAGTTCAAGCGGTTCTGCCAGCAGTTCGCAGCTCCCACCTGGCAGgtaggagtag ... ctttactcagGACTTTACCTAGGAGCGGCTCGGCGCGCAACATGTGAAGGCATGTAGGAAT
EST: TTTGGTAGTTCAAGCGGTTCTGCCAGCAGTTCGCAGCTCCCACCTGGCAG GACTTTACCTAGGAGCGGCTCGGCGCGCAACATGTGAAGGCATGTAGGAAT
genomic: TTTGGTAGTTCAAGCGGTTCTGCCAGCAGTTCGCAGCTCCCACCTGGCAGgtaggagtag ... ctttactcagGACTTTACCTAGGAGCGGCTCGGCGCGCAACATGTGAAGGCATGTAGGAAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGCTGGCAGCTGTGCGCTTGGAGAAAGAGCAGGATAACAGGGCAAGACGTTTTGGTAGTTCAAGCGGTTCTGCCAGCAGTTCGCAGCTCCCACCTGGCAGgtaggagtagttcgctaccttgagttgaagagtctgtagtatgtgattgaccagatttgcgtgcatctttactcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC