1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TTTACAGGAATGCAGAGGATATGAATTACCACTCGGTCTGTTTGCATGTGTTGGCAGATTCAATACGGAGgtacatgcattcccaggcattgttggactcttcccttgtgcacattatacttttgtaccttgctggttgccacacgttgatattgattgactgacgcttgttatttctttcacag
species | Zea mays |
transcript | GRMZM2G017365_T08 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: ATGAATTACCACTCGGTCTGTTTGCATGTGTTGGCAGATTCAATACGGAG TGCAGGCTTGATACTAGCTTCTTGGTTTCTTTCATTGGGEST: gi|76014355|gb|DT941525.1|DT941525
genomic: ATGAATTACCACTCGGTCTGTTTGCATGTGTTGGCAGATTCAATACGGAGgtacatgcat ... tctttcacagTGCAGGCTTGATACTAGCTTCTTGGTTTCTTTCATTGGG
EST: ATGAATTACCACTCGGTCTGTTTGCATGTGTTGGCAGATTCAATAC---G -G-AGGCTTGATACTAGCTTCTTGGTTTCTTTCATTGGGEST: gi|166515273|gb|EG246371.1|EG246371
genomic: ATGAATTACCACTCGGTCTGTTTGCATGTGTTGGCAGATTCAATACGGAGgtacatgcat ... tctttcacagTGCAGGCTTGATACTAGCTTCTTGGTTTCTTTCATTGGG
EST: ATGAATTACCACTCGGTCTGTTTGCATGTGTTGGCAGATTCAATACGGAG TGCAGGCTTGATACTAGCTTCTTGGTTTCTTEST: gi|211384669|gb|FL388814.1|FL388814
genomic: ATGAATTACCACTCGGTCTGTTTGCATGTGTTGGCAGATTCAATACGGAGgtacatgcat ... tctttcacagTGCAGGCTTGATACTAGCTTCTTGGTTTCTT
EST: ATGAATTACCACTCGGTCTGTTTGCATGTGTTGGCAGATTCAATACGGAG TGCAGGCTTGATACTAGCTTCTTGGTTTCTTTCATTGGGEST: gi|9953706|gb|BE640289.1|BE640289
genomic: ATGAATTACCACTCGGTCTGTTTGCATGTGTTGGCAGATTCAATACGGAGgtacatgcat ... tctttcacagTGCAGGCTTGATACTAGCTTCTTGGTTTCTTTCATTGGG
EST: TCGGTCTGTTTGCATGTGTTGGCAGATTCAATACGGAG TGCAGGCTTGATACTAGCTTCTTGGTTTCTTTCATTGGGEST: gi|211489499|gb|FL457182.1|FL457182
genomic: TCGGTCTGTTTGCATGTGTTGGCAGATTCAATACGGAGgtacatgcat ... tctttcacagTGCAGGCTTGATACTAGCTTCTTGGTTTCTTTCATTGGG
EST: CCACTCGGTCTGTTTGCATGTGTTGGCAGATTCAATACGGAG TGCAGGCTTGATACTAGCTTCTTGGTTTCTTTCATTGGGEST: gi|71442151|gb|DR823201.1|DR823201
genomic: CCACTCGGTCTGTTTGCATGTGTTGGCAGATTCAATACGGAGgtacatgcat ... tctttcacagTGCAGGCTTGATACTAGCTTCTTGGTTTCTTTCATTGGG
EST: ATGAATTACCACTCGGTCTGTTTGCATGTGTTGGCAGATTCAATACGGAG TGCAGGCTTGATACTAGCTTCTTGGTTTCTTTCATTGGG
genomic: ATGAATTACCACTCGGTCTGTTTGCATGTGTTGGCAGATTCAATACGGAGgtacatgcat ... tctttcacagTGCAGGCTTGATACTAGCTTCTTGGTTTCTTTCATTGGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTTACAGGAATGCAGAGGATATGAATTACCACTCGGTCTGTTTGCATGTGTTGGCAGATTCAATACGGAGgtacatgcattcccaggcattgttggactcttcccttgtgcacattatacttttgtaccttgctggttgccacacgttgatattgattgactgacgcttgttatttctttcacag
- - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT