Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCATCAGTGGTCACTTGGGATGGGTTCGATCTATTGCATTTGATCCAGCGAATGAATGGTTCTGCACTGGTTCTGCCGATAGGACAATAAAGgtaaatttcatttatcctgcagtcgcaaactgaaataactcttttgtgttcttgatattatcttgttctcgtcaggttatctctatgatttcatgacatt...

Basic information

species Zea mays
transcript GRMZM2G017089_T02
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G017089_T02 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os03g21990.1 (Oryza sativa), 5'ss of exon 8
GTCATCAGTGGTCACTTGGGATGGGTTCGATCTATTGCATTTGATCCAGCGAATGAATGGTTCTGCACTGGTTCTGCCGATAGGACAATAAAGgtaaattt---catttatcctgcagtcgcaaactgaaataactcttttgtgtt--cttgatattatcttgttctcgtcaggttatctctatgatttcatgacatt
|| ||||||||||||||||||||||| || || |||||||||||||||   || ||||||||||| || ||||||||||| ||||| || ||||| |  ||   |  || | ||||||| |    |  | ||  ||||    | ||  | || || || ||   |  |      ||    |    |||  |  |    
GTGATCAGTGGTCACTTGGGATGGGTGCGGTCAATTGCATTTGATCCAAGTAACGAATGGTTCTGTACGGGTTCTGCCGACAGGACGATTAAGgtgagcttgctctcttcttctgcagtagtgttccaatatg-ctctgggatttttacatgttactagctgaatgcccgtgctttgcgacaggaattaaaaaa----

upper sequence: GRMZM2G017089_T02 (Zea mays), 5'ss of exon 6
lower sequence: GLYMA09G04910.1 (Glycine max), 5'ss of exon 7
GTCATCAGTGGTCACTTGGGATGGGTTCGATCTATTGCATTTGATCCAGCGAATGAATGGTTCTGCACTGGTTCTGCCGATAGGACAATAAAGgta---aatttca---tttatcctgcagtcgcaaactgaaataactcttttgtgttcttgatattatcttgttctcgtcaggttatctctatgatttcatgacatt
|||||||| |||||||||||||||||  ||||| ||||| |||||||    ||   |||||| || ||||||||||| ||| | || || ||||||    ||  ||   |  ||     ||| ||    |   | ||  | | | | |       |  || | |||   | || |||       |||||  |||     
GTCATCAGCGGTCACTTGGGATGGGTGAGATCTGTTGCAGTTGATCCCAGTAACACATGGTTTTGTACTGGTTCTGCAGATCGAACTATCAAGgtatttgatcacaaaatgcatgtcatagttgcttgttatgaaaaggcatatttataagaacaaaaatttagtt--ggccatgttgaactgttgattctatgg----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78085590|gb|DV513983.1|DV513983
EST:     ATCCAGCGAATGAATGGTTCTGCACTGGTTCTGCCGATAGGACAATAAAG                         ATATGGGATCTTGCATCAGGAACCCTGAAGCTTACACTGACTGGTCATATT
genomic: ATCCAGCGAATGAATGGTTCTGCACTGGTTCTGCCGATAGGACAATAAAGgtaaatttca ... cttgctgtagATATGGGATCTTGCATCAGGAACCCTGAAGCTTACACTGACTGGTCATATT
EST: gi|6021220|gb|AW066148.1|AW066148
EST:     ATCCAGCGAATGAATGGTTCTGCACTGGTTCTGCCGATAGGACAATAAAG                         ATATGGGATCTTGCATCAGGAACCCTGAAGCTTACACTGACTGGTCATATT
genomic: ATCCAGCGAATGAATGGTTCTGCACTGGTTCTGCCGATAGGACAATAAAGgtaaatttca ... cttgctgtagATATGGGATCTTGCATCAGGAACCCTGAAGCTTACACTGACTGGTCATATT
EST: gi|32933221|gb|CF038033.1|CF038033
EST:     ATCCAGCGAATGAATGGTTCTGCACTGGTTCTGCCGATAGGACAATAAAG                         ATATGGGATCTTGCATCAGGAACCCTGAAGCTTACACTGACTGGTCATATT
genomic: ATCCAGCGAATGAATGGTTCTGCACTGGTTCTGCCGATAGGACAATAAAGgtaaatttca ... cttgctgtagATATGGGATCTTGCATCAGGAACCCTGAAGCTTACACTGACTGGTCATATT
EST: gi|94478034|gb|EB706992.1|EB706992
EST:     ATCCAGCGAATGAATGGTTCTGCACTGGTTCTGCCGATAGGACAATAAAG                         ATATGGGATCTTGCATCAGGAACCCTGAAGCTTACACTGACTGGTCATATT
genomic: ATCCAGCGAATGAATGGTTCTGCACTGGTTCTGCCGATAGGACAATAAAGgtaaatttca ... cttgctgtagATATGGGATCTTGCATCAGGAACCCTGAAGCTTACACTGACTGGTCATATT
EST: gi|148962621|gb|EE013511.2|EE013511
EST:     ATCCAGCGAATGAATGGTTCTGCACTGGTTCTGCCGATAGGACAATAAAG                         ATATGGGATCTTGCATCAGGAACCCTGAAGCTTACACTGACTGGCCATATT
genomic: ATCCAGCGAATGAATGGTTCTGCACTGGTTCTGCCGATAGGACAATAAAGgtaaatttca ... cttgctgtagATATGGGATCTTGCATCAGGAACCCTGAAGCTTACACTGACTGGTCATATT