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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATTGACCAAGCTTCTCATAATTTGACTGTTGCTACTCGTAATACCTTTGGTGATCTTGATCAAAGTGTTCGCCCTGTTGCACCTCTACAATTCTTGCAGgtgaggtcaccatcattaagctattatatctaggctaataaagtatattttctcttagttctggagcagaagagctcatttcgttactgttgtccttgaa...

Basic information

species Zea mays
transcript GRMZM2G017086_T04
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G017086_T01 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os01g36930.1 (Oryza sativa), 5'ss of exon 6
CATTGACCAAGCTTCTCATAATTTGACTGTTGCTACTCGTAATACCTTTGGTGATCTTGATCAAAGTGTTCGCCCTGTTGCACCTCTACAATTCTTGCAGgtgag------gtcaccatcattaagctattatatctaggctaataaagtatattttctcttagttctg-gagcagaagagctcatttcgttactgttgtccttgaa
  |||||||||| || ||||||||||||||||| ||||||||||| || || || ||||||||||||||||| ||||||||||||||||  ||||| ||||| ||      |    |  ||||  || |||| |||||     | | | |    ||    |   ||||| ||  || |||||||     | | || || |  |    
TGTTGACCAAGCCTCCCATAATTTGACTGTTGCAACTCGTAATACTTTCGGAGAGCTTGATCAAAGTGTTCGGCCTGTTGCACCTCTACTCTTCTTACAGgtcagcattcagcttaccccatttggccattacatctaaagctagagaat---cttcaattcgtttctgtgattaggagagctc-cagagctccttttatgtta---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32934266|gb|CF039078.1|CF039078
EST:     GTGATCTTGATCAAAGTGTTCGCCCTGTTGCACCTCTACAATTCTTGCAG                         ACACTGCGTAAAAAATACCCGCAATTTGCACAGCAGCATAATAATGTCTAC
genomic: GTGATCTTGATCAAAGTGTTCGCCCTGTTGCACCTCTACAATTCTTGCAGgtgaggtcac ... ttttgagcagACACTGCGTAAAAAATACCCGCAATTTGCACAGCAGCATAATAATGTCTAC
EST: gi|241994792|gb|GR421145.1|GR421145
EST:     GTGATCTTGATCAAAGTGTTCGCCCTGTTGCACCTCTACAATTCTTGCAG                         ACACTGCGTAAAAAATACCCGCAATTTGCGCAGCAGCATAATAATGTCTAC
genomic: GTGATCTTGATCAAAGTGTTCGCCCTGTTGCACCTCTACAATTCTTGCAGgtgaggtcac ... ttttgagcagACACTGCGTAAAAAATACCCGCAATTTGCACAGCAGCATAATAATGTCTAC
EST: gi|32932531|gb|CF037343.1|CF037343
EST:     GTGATCTTGATCAAAGTGTTCGCCCTGTTGCACCTCTACAATTCTTGCAG                         ACACTGCGTAAAAAATACCCGCAATTTGCACAGCAGCATAATAATGTCTAC
genomic: GTGATCTTGATCAAAGTGTTCGCCCTGTTGCACCTCTACAATTCTTGCAGgtgaggtcac ... ttttgagcagACACTGCGTAAAAAATACCCGCAATTTGCACAGCAGCATAATAATGTCTAC
EST: gi|211437528|gb|FK975648.1|FK975648
EST:     GTGATCTTGATCAAAGTGTTCGCCCTGTTGCACCTCTACAATTCTTGCAG                         ACACTGCGTAAAAAATACCCGCAATTTGCGCAGCAGCATAATAATGTCTAC
genomic: GTGATCTTGATCAAAGTGTTCGCCCTGTTGCACCTCTACAATTCTTGCAGgtgaggtcac ... ttttgagcagACACTGCGTAAAAAATACCCGCAATTTGCACAGCAGCATAATAATGTCTAC
EST: gi|32863109|gb|CF002791.1|CF002791
EST:     GTGATCTTGATCAAAGTGTTCGCCCTGTTGCACCTCTACAATTCTTGCAG                         ACACTGCGTNNNNNNNTACCCGCAATTTGCACAGCAGCATAATAATGTCTA
genomic: GTGATCTTGATCAAAGTGTTCGCCCTGTTGCACCTCTACAATTCTTGCAGgtgaggtcac ... ttttgagcagACACTGCGTAAAAAA-TACCCGCAATTTGCACAGCAGCATAATAATGTCTA
EST: gi|32935100|gb|CF039912.1|CF039912
EST:     GTGATCTTGATCAAAGTGTTCGCCCTGTTGCACCTCTACAATTCTTGCAG                         ACACTGCGTAAAAAATACCCGCAATTTGCACAGCAGCATAATAATGTCTAC
genomic: GTGATCTTGATCAAAGTGTTCGCCCTGTTGCACCTCTACAATTCTTGCAGgtgaggtcac ... ttttgagcagACACTGCGTAAAAAATACCCGCAATTTGCACAGCAGCATAATAATGTCTAC
EST: gi|32930082|gb|CF034894.1|CF034894
EST:     GTGATCTTGATCAAAGTGTTCGCCCTGTTGCACCTCTACAATTCTTGCAG                         ACACTGCGTAAAAAATACCCGCAATTTGCACAGCAGCATAATAATGTCTAC
genomic: GTGATCTTGATCAAAGTGTTCGCCCTGTTGCACCTCTACAATTCTTGCAGgtgaggtcac ... ttttgagcagACACTGCGTAAAAAATACCCGCAATTTGCACAGCAGCATAATAATGTCTAC
EST: gi|32945380|gb|CF050199.1|CF050199
EST:     GTGATCTTGATCAAAGTGTTCGCCCTGTTGCACCTCTACAATTCTTGCAG                         ACACTGCGTAAAAAATACCCGCAATTTGCACAGCAGCATAATAATGTCTAC
genomic: GTGATCTTGATCAAAGTGTTCGCCCTGTTGCACCTCTACAATTCTTGCAGgtgaggtcac ... ttttgagcagACACTGCGTAAAAAATACCCGCAATTTGCACAGCAGCATAATAATGTCTAC
EST: gi|32866635|gb|CF006317.1|CF006317
EST:     GTGATCTTGATCAAAGTGTTCGCCCTGTTGCACCTCTACGATTCTTGCAG                         ACACTGCGTAAAAAATACCCGCAATTTGCACAGCAGCATAATAATGTCTAC
genomic: GTGATCTTGATCAAAGTGTTCGCCCTGTTGCACCTCTACAATTCTTGCAGgtgaggtcac ... ttttgagcagACACTGCGTAAAAAATACCCGCAATTTGCACAGCAGCATAATAATGTCTAC
EST: gi|32911302|gb|CF016114.1|CF016114
EST:     GTGATCTTGATCAAAGTGTTCGCCCTGTTGCACCTCTACAATTCTTGCAG                         ACACTGCGTAAAAAATACCCGCAATTTGCACAGCAGCATAATAATGTCTAC
genomic: GTGATCTTGATCAAAGTGTTCGCCCTGTTGCACCTCTACAATTCTTGCAGgtgaggtcac ... ttttgagcagACACTGCGTAAAAAATACCCGCAATTTGCACAGCAGCATAATAATGTCTAC
EST: gi|32932473|gb|CF037285.1|CF037285
EST:     GTGATCTTGATCAAAGTGTTCGCCCTGTTGCACCTCTACAATTCTTGCAG                         ACACTGCGTAAAAAATACCCGCAATTTGCACAGCAGCATAATAATGTCTAC
genomic: GTGATCTTGATCAAAGTGTTCGCCCTGTTGCACCTCTACAATTCTTGCAGgtgaggtcac ... ttttgagcagACACTGCGTAAAAAATACCCGCAATTTGCACAGCAGCATAATAATGTCTAC
EST: gi|211085323|gb|FL409653.1|FL409653
EST:     TGGTCTTGGATCAAAGTGGTCGCCCTGGTGCACCTCTACA-TTCTTGCAG                         ACACTGCGTAAAAAATACCCCGCA-TTTGC-CAGCAGCATAATA
genomic: TGATCTTG-ATCAAAGTGTTCGCCCTGTTGCACCTCTACAATTCTTGCAGgtgaggtcac ... ttttgagcagACACTGCGTAAAAAATACCC-GCAATTTGCACAGCAGCATAATA
EST: gi|74240015|gb|DT647929.1|DT647929
EST:     GTGATCTTGATCAAAGTGTTCGCCCTGTTGCACCTCTACAATTCTTGCAG                         ACACTGCGTAAAAAATACCCGCAATTTGCACAGCAGCATAATAATGTCTAC
genomic: GTGATCTTGATCAAAGTGTTCGCCCTGTTGCACCTCTACAATTCTTGCAGgtgaggtcac ... ttttgagcagACACTGCGTAAAAAATACCCGCAATTTGCACAGCAGCATAATAATGTCTAC
EST: gi|32931528|gb|CF036340.1|CF036340
EST:     GTGATCTTGATCAAAGTGTTCGCCCTGTTGCACCTCTACAATTCTTGCAG                         ACACTGCGTAAAAAATACCCGCAATTTGCACAGCAGCATAATAATGTCTAC
genomic: GTGATCTTGATCAAAGTGTTCGCCCTGTTGCACCTCTACAATTCTTGCAGgtgaggtcac ... ttttgagcagACACTGCGTAAAAAATACCCGCAATTTGCACAGCAGCATAATAATGTCTAC
EST: gi|67017287|gb|CO446036.1|CO446036
EST:     GTGATCTTGATCAAAGTGTTCGCCCTGTTGCACCTCTACAATTCTTGCAG                         ACACTGCGTAAAAAATACCCGCAATTTGCGCAGCAGCATAATAATGTCTAC
genomic: GTGATCTTGATCAAAGTGTTCGCCCTGTTGCACCTCTACAATTCTTGCAGgtgaggtcac ... ttttgagcagACACTGCGTAAAAAATACCCGCAATTTGCACAGCAGCATAATAATGTCTAC
EST: gi|211536230|gb|FL396283.1|FL396283
EST:     GTGATCTTGATCNAAGTGTTCGCCCTGGTGCACCTCTACNATTCTTGCAG                         ACACTGCGTAAAAA-TACCCGCA
genomic: GTGATCTTGATCAAAGTGTTCGCCCTGTTGCACCTCTACAATTCTTGCAGgtgaggtcac ... ttttgagcagACACTGCGTAAAAAATACCCGCA
EST: gi|33094903|gb|CF054897.1|CF054897
EST:     GTGATCTTGATCAAAGTGTTCGCCCTGTTGCACCTCTACAATTCTTGCAG                         ACACTGCGTAAAAAATACCCGCAATTTGCACAGCAGCATAATAATGTCTAC
genomic: GTGATCTTGATCAAAGTGTTCGCCCTGTTGCACCTCTACAATTCTTGCAGgtgaggtcac ... ttttgagcagACACTGCGTAAAAAATACCCGCAATTTGCACAGCAGCATAATAATGTCTAC
EST: gi|31998167|gb|CD661962.1|CD661962
EST:     GTGATCTTGATCAAAGGGTTCGCCCTGTTGCACCTCTACAATTCTTGCAG                         ACACTGCGTAAAAAA
genomic: GTGATCTTGATCAAAGTGTTCGCCCTGTTGCACCTCTACAATTCTTGCAGgtgaggtcac ... ttttgagcagACACTGCGTAAAAAA
EST: gi|50332356|gb|CO527482.1|CO527482
EST:     GTGATCTTGATCAAAGTGTTCGCCCTGTTGCACCTCTACAATTCTTGCAG                         ACACTGCGTAAAAAATACCCGCAATTTGCACAGCAGCATAATAATGTCTAC
genomic: GTGATCTTGATCAAAGTGTTCGCCCTGTTGCACCTCTACAATTCTTGCAGgtgaggtcac ... ttttgagcagACACTGCGTAAAAAATACCCGCAATTTGCACAGCAGCATAATAATGTCTAC