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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCATTGGAGTTAAAGAAAAACTAGAATCTCTTTGTAGGGAGTTTCAGCGTCAAAACAAAATGCTAAAGgtatgttcagtgtatttgttctttgaatcaaagcgctataaaagagttcttttcaatttttttttaaatttttataccattttagcatctttatctcag

Basic information

species Zea mays
transcript GRMZM2G015730_T03
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G015730_T03 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os03g17930.1 (Oryza sativa), 5'ss of exon 4
CCATTGGAGTTAAAGAAAAACTAGAATCTCTTTGTAGGGAGTTTCAGCGTCAAAACAAAATGCTAAAGgtatgttcagtgtatttgttctttgaatcaaagcgctataaaagagttcttttcaatttttttttaaatttttataccattttagcatctttatctcag
| |||| ||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||    |   |  |||     |  |  ||| |           || |||||| |||| ||   || | | ||| | ||||||| |   |  |||||
CTATTGCAGTTAAAGAGAAACTAGAGTCTCTTTGTAGGGAGTTTCAGCGTCAAAATAAAATGCTAAAGgtatg----gaacaagtgtatcgagttttgaagtgtct------gtttattttcacttttgttc--aactataatatc-ttttagcgttgatgactcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|40337560|gb|CK371630.1|CK371630
EST:     AACTAGAATCTCTTTGTAGGGAGTTTCAGCGTCAAAACAAAATGCTAAAG                         GAAGAGTGCCAAAGGGTGTCGACGGAGGGACAGAACATGCGTATGGAATTG
genomic: AACTAGAATCTCTTTGTAGGGAGTTTCAGCGTCAAAACAAAATGCTAAAGgtatgttcag ... tttatctcagGAAGAGTGCCAAAGGGTGTCGACGGAGGGACAGAACATGCGTATGGAATTG
EST: gi|31354045|gb|CD438402.1|CD438402
EST:     AACTAGAATCTCTTTGTAGGGAGTTTCAGCGTCCTCCCAAAATGCTAAAG                         GAAGAGTGCCAAAGGGTGTCGACGGAGGGACAGAACATGCGTATGGAATTG
genomic: AACTAGAATCTCTTTGTAGGGAGTTTCAGCGTCAAAACAAAATGCTAAAGgtatgttcag ... tttatctcagGAAGAGTGCCAAAGGGTGTCGACGGAGGGACAGAACATGCGTATGGAATTG