1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TAGTTAAGAAAAGGATCCCTGTGCTTATATTCTGCAACAAGACGGATAAAGTTACCGCCCACTCGAAGGAATTCATCAAGAAACAGTTGGAGAAAGAATTgtaaggacaactctccaagtcccaacatttatcgtacttgcatacctagaattagaaattctaaactcagtagtgcatgctgcataaatgctgtgatcat...
species | Zea mays |
transcript | GRMZM2G015642_T01 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GTTACCGCCCACTCGAAGGAATTCATCAAGAAACAGTTGGAGAAAGAATT GAACAAGCTTCGGGAATCAAGGAACGCCATATCTTCAGCTGACATCTCTGAEST: gi|50331664|gb|CO526790.1|CO526790
genomic: GTTACCGCCCACTCGAAGGAATTCATCAAGAAACAGTTGGAGAAAGAATTgtaaggacaa ... catgttgtagGAACAAGCTTCGGGAATCAAGGAACGCCATATCTTCAGCTGACATCTCTGA
EST: GTTACCGCCCACTCGAAGGAATTCATCAAGAAACAGTTGGAGAAAGAATT GAACAAGCTTCGGGAATCAAGGAACGCCATATTTTCAGCTGACATTTTTGAEST: gi|5006033|gb|AI712095.1|AI712095
genomic: GTTACCGCCCACTCGAAGGAATTCATCAAGAAACAGTTGGAGAAAGAATTgtaaggacaa ... catgttgtagGAACAAGCTTCGGGAATCAAGGAACGCCATATCTTCAGCTGACATCTCTGA
EST: GTTACCGCCCACTCGAAGGAATTCATCAAGAAACAGTTGGAGAAAGAATT GAACAAGCTTCGGGAATCAAGGAACGCCATATCTTCAGCTGACATCTCTGAEST: gi|149082784|gb|EE172006.2|EE172006
genomic: GTTACCGCCCACTCGAAGGAATTCATCAAGAAACAGTTGGAGAAAGAATTgtaaggacaa ... catgttgtagGAACAAGCTTCGGGAATCAAGGAACGCCATATCTTCAGCTGACATCTCTGA
EST: GTTACCGCCCACTCGAAGGAATTCATCAAGAAACAGTTGGAGAAAGAATT GAACAAGCTTCGGGAATCAAGGAACGCCATATTTTCAGCTGACATTTTTGAEST: gi|71428601|gb|DR809651.1|DR809651
genomic: GTTACCGCCCACTCGAAGGAATTCATCAAGAAACAGTTGGAGAAAGAATTgtaaggacaa ... catgttgtagGAACAAGCTTCGGGAATCAAGGAACGCCATATCTTCAGCTGACATCTCTGA
EST: GTTACCGCCCACTCGAAGGAATTCATCAAGAAACAGTTGGAGAAAGAATT GAACAAGCTTCGGGAATCAAGGAACGCCATATCTTCAGCTGACATCTCTGAEST: gi|32864563|gb|CF004245.1|CF004245
genomic: GTTACCGCCCACTCGAAGGAATTCATCAAGAAACAGTTGGAGAAAGAATTgtaaggacaa ... catgttgtagGAACAAGCTTCGGGAATCAAGGAACGCCATATCTTCAGCTGACATCTCTGA
EST: GTTACCGCCCACTCGAAGGAATTCATCAAGAAACAGTTGGAGAAAGAATT GAACAAGCTTCGGGAATCAAGGAACGCCATATCTTCAGCTGACATCTCTGAEST: gi|76911904|gb|DV164485.1|DV164485
genomic: GTTACCGCCCACTCGAAGGAATTCATCAAGAAACAGTTGGAGAAAGAATTgtaaggacaa ... catgttgtagGAACAAGCTTCGGGAATCAAGGAACGCCATATCTTCAGCTGACATCTCTGA
EST: GTTACCGCCCACTCGAAGGAATTCATCAAGAAACAGTTGGAGAAAGAATT GAACAAGCTTCGGGAATCAAGGAACGCCATATCTTCAGCTGACATCTCTGAEST: gi|17931965|gb|BM268925.1|BM268925
genomic: GTTACCGCCCACTCGAAGGAATTCATCAAGAAACAGTTGGAGAAAGAATTgtaaggacaa ... catgttgtagGAACAAGCTTCGGGAATCAAGGAACGCCATATCTTCAGCTGACATCTCTGA
EST: GTTACCGCCCACTCGAAGGAATTCATCAAGAAACAGTTGGAGAAAGAATT GAACAAGCTTCGGGAATCAAGGAACGCCATATCTTCAGCTGACATCTCTGAEST: gi|4827441|gb|AI668133.1|AI668133
genomic: GTTACCGCCCACTCGAAGGAATTCATCAAGAAACAGTTGGAGAAAGAATTgtaaggacaa ... catgttgtagGAACAAGCTTCGGGAATCAAGGAACGCCATATCTTCAGCTGACATCTCTGA
EST: GTTACCGCCCACTCGAAGGAATTCATCAAGAAACAGTTGGAGAAAGAATT GAACAAGCTTCGGGAATCAAGGAACGCCATATCTTCAGCTGACATCTCTGAEST: gi|211371450|gb|FL285907.1|FL285907
genomic: GTTACCGCCCACTCGAAGGAATTCATCAAGAAACAGTTGGAGAAAGAATTgtaaggacaa ... catgttgtagGAACAAGCTTCGGGAATCAAGGAACGCCATATCTTCAGCTGACATCTCTGA
EST: GTTACCGCCCACTCGAAGGAATTCATCAAGAAACAGTTGGAGAAAGAATT GAACAAGCTTCGTGAATCAAGGAACGCCATATCTTCAGCTGACATCTCTGAEST: gi|91054430|gb|EB164848.1|EB164848
genomic: GTTACCGCCCACTCGAAGGAATTCATCAAGAAACAGTTGGAGAAAGAATTgtaaggacaa ... catgttgtagGAACAAGCTTCGGGAATCAAGGAACGCCATATCTTCAGCTGACATCTCTGA
EST: GTTACCGCCCACTCGAAGGAATTCATCAAGAAACAGTTGGAGAAAGAATT GAACAAGCTTCGGGAATCAAGGAACGCCATATCTTCAGCTGACATCTCTGAEST: gi|50331665|gb|CO526791.1|CO526791
genomic: GTTACCGCCCACTCGAAGGAATTCATCAAGAAACAGTTGGAGAAAGAATTgtaaggacaa ... catgttgtagGAACAAGCTTCGGGAATCAAGGAACGCCATATCTTCAGCTGACATCTCTGA
EST: GTTACCGCCCACTCGAAGGAATTCATCAAGAAACAGTTGGAGAAAGAATT GAACNAGCTTCGGGAAATCA-GGAACGCCATATCTTCAGCTGACATCTCTGEST: gi|94476999|gb|EB705957.1|EB705957
genomic: GTTACCGCCCACTCGAAGGAATTCATCAAGAAACAGTTGGAGAAAGAATTgtaaggacaa ... catgttgtagGAACAAGCTTCGGGAA-TCAAGGAACGCCATATCTTCAGCTGACATCTCTG
EST: GTTACCGCCCACTCGAAGGAATTCATCAAGAAACAGTTGGAGAAAGAATT GAACAAGCTTCGGGAATCAAGGAACGCCATATCTTCAGCTGACATCTCTGAEST: gi|71757402|gb|DR955339.1|DR955339
genomic: GTTACCGCCCACTCGAAGGAATTCATCAAGAAACAGTTGGAGAAAGAATTgtaaggacaa ... catgttgtagGAACAAGCTTCGGGAATCAAGGAACGCCATATCTTCAGCTGACATCTCTGA
EST: GTTACCGCCCACTCGAAGGAATTCATCAAGAAACAGTTGGAGAAAGAATT GAACAAGCTTCGGGAATCAAGGAACGCCATATCTTCAGCTGACATCTCTGAEST: gi|76013858|gb|DT941028.1|DT941028
genomic: GTTACCGCCCACTCGAAGGAATTCATCAAGAAACAGTTGGAGAAAGAATTgtaaggacaa ... catgttgtagGAACAAGCTTCGGGAATCAAGGAACGCCATATCTTCAGCTGACATCTCTGA
EST: GTTACCGCCCACTCGAAGGAATTCATCAAGAAACAGTTGGAGAAAGAATT GAACAAGCTTCGGGAATCAAGGAACGCCATATCTTCAGCTGACATCTCTGAEST: gi|86467969|gb|DY234339.1|DY234339
genomic: GTTACCGCCCACTCGAAGGAATTCATCAAGAAACAGTTGGAGAAAGAATTgtaaggacaa ... catgttgtagGAACAAGCTTCGGGAATCAAGGAACGCCATATCTTCAGCTGACATCTCTGA
EST: GTTACCGCCCACTCGAAGGAATTCATCAAGAAACAGTTGGAGAAAGAATT GAACAAGCTTCGGGAATCAAGGAACGCCATATCTTCAGCTGACATCTCTGAEST: gi|74245853|gb|DT653767.1|DT653767
genomic: GTTACCGCCCACTCGAAGGAATTCATCAAGAAACAGTTGGAGAAAGAATTgtaaggacaa ... catgttgtagGAACAAGCTTCGGGAATCAAGGAACGCCATATCTTCAGCTGACATCTCTGA
EST: GTTACCGCCCACTCGAAGGAATTCATCAAGAAACAGTTGGAGAAAGAATT GAACAAGCTTCGGGAATCAAGGAACGCCATATCTTCAGCTGACATCTTTGAEST: gi|31354626|gb|CD438983.1|CD438983
genomic: GTTACCGCCCACTCGAAGGAATTCATCAAGAAACAGTTGGAGAAAGAATTgtaaggacaa ... catgttgtagGAACAAGCTTCGGGAATCAAGGAACGCCATATCTTCAGCTGACATCTCTGA
EST: GTTACCGCCCACTCGAAGGAATTCATCAAGAAACAGTTGGAGAAAGAATT TEST: gi|31354626|gb|CD438983.1|CD438983
genomic: GTTACCGCCCACTCGAAGGAATTCATCAAGAAACAGTTGGAGAAAGAATTgtaaggacaa ... catgttgtag-
EST: GTTACCGCCCACTCGAAGGAATTCATCAAGAAACAGTTGGAGAAAGAATT TEST: gi|78111328|gb|DV529725.1|DV529725
genomic: GTTACCGCCCACTCGAAGGAATTCATCAAGAAACAGTTGGAGAAAGAATTgtaaggacaa ... catgttgtag-
EST: GTTACCGCCCACTCGAAGGAATTCATCAAGAAACAGTTGGAGAAAGAATT GAACAAGCTTCGGGAATCAAGGAACGCCATATCTTCAGCTGACATCTCTGAEST: gi|32790010|gb|CD942246.1|CD942246
genomic: GTTACCGCCCACTCGAAGGAATTCATCAAGAAACAGTTGGAGAAAGAATTgtaaggacaa ... catgttgtagGAACAAGCTTCGGGAATCAAGGAACGCCATATCTTCAGCTGACATCTCTGA
EST: GTTACCGCCCACTCGAAGGAATTCATCAAGAAACAGTTGGAGAAAGAATT GAACAAGCTTCGGGAATCAAGGAACGCCATATCTTCAGCTGACATCTCTGAEST: gi|71764913|gb|DR962850.1|DR962850
genomic: GTTACCGCCCACTCGAAGGAATTCATCAAGAAACAGTTGGAGAAAGAATTgtaaggacaa ... catgttgtagGAACAAGCTTCGGGAATCAAGGAACGCCATATCTTCAGCTGACATCTCTGA
EST: GTTACCGCCCACTCGAAGGAATTCATCAAGAAACAGTTGGAGAAAGAATT GAACAAGCTTCGGGAATCAAGGAACGCCATATCTTCAGCTGACATCTCTGAEST: gi|74245303|gb|DT653217.1|DT653217
genomic: GTTACCGCCCACTCGAAGGAATTCATCAAGAAACAGTTGGAGAAAGAATTgtaaggacaa ... catgttgtagGAACAAGCTTCGGGAATCAAGGAACGCCATATCTTCAGCTGACATCTCTGA
EST: TTACCGCCCACTCGAAGGAATTCATCAAGAAACAGTTGGGAGAAAGAATT GAACAAGCTTCGGGAATTCAAGGAACGCCATATCTTCAGCTGACATCTCTGEST: gi|78076004|gb|DV504438.1|DV504438
genomic: TTACCGCCCACTCGAAGGAATTCATCAAGAAACAGTTGG-AGAAAGAATTgtaaggacaa ... catgttgtagGAACAAGCTTCGGGAAT-CAAGGAACGCCATATCTTCAGCTGACATCTCTG
EST: GTTACCGCCCACTCGAAGGAATTCATCAAGAAACAGTTGGAGAAAGAATT GAACAAGCTTCGGGAAATCA-GGAACGCCATATCTTCAGCTGACATCTCTGEST: gi|4776536|gb|AI665539.1|AI665539
genomic: GTTACCGCCCACTCGAAGGAATTCATCAAGAAACAGTTGGAGAAAGAATTgtaaggacaa ... catgttgtagGAACAAGCTTCGGGAA-TCAAGGAACGCCATATCTTCAGCTGACATCTCTG
EST: TACCGCCCACTCGAAGGAATTCATCAAGAAACAGTTGGAGAAAGAATT GAACAAGCTTCGGGAATCAAGGAACGCCATATCTTCAGCTGACATCTCTGAEST: gi|32802376|gb|CD954612.1|CD954612
genomic: TACCGCCCACTCGAAGGAATTCATCAAGAAACAGTTGGAGAAAGAATTgtaaggacaa ... catgttgtagGAACAAGCTTCGGGAATCAAGGAACGCCATATCTTCAGCTGACATCTCTGA
EST: GTTACCGCCCACTCGAAGGAATTCATCAAGAAACAGTTGGAGAAAGAATT GAACAAGCTTCGGGAATCAAGGAACGCCATATCTTCAGCTGACATCTCTGAEST: gi|31355278|gb|CD439635.1|CD439635
genomic: GTTACCGCCCACTCGAAGGAATTCATCAAGAAACAGTTGGAGAAAGAATTgtaaggacaa ... catgttgtagGAACAAGCTTCGGGAATCAAGGAACGCCATATCTTCAGCTGACATCTCTGA
EST: GTTACCGCCCACTCGAAGGAATTCATCAAGAAACAGTTGGAGAAAGAATT GAACAAGCTTCGGGAATCAAGGAACGCCATATCTTCAGCTGACATCTCTGAEST: gi|71312730|gb|DR792897.1|DR792897
genomic: GTTACCGCCCACTCGAAGGAATTCATCAAGAAACAGTTGGAGAAAGAATTgtaaggacaa ... catgttgtagGAACAAGCTTCGGGAATCAAGGAACGCCATATCTTCAGCTGACATCTCTGA
EST: GTTACCGCCCACTCGAAGGAATTCATCAAGAAACAGTTGGAGAAAGAATT GAACAAGCTTCGGGAATCAAGGAACGCCATATCTTCAGCTGACATCTCTGAEST: gi|211208755|gb|FL469090.1|FL469090
genomic: GTTACCGCCCACTCGAAGGAATTCATCAAGAAACAGTTGGAGAAAGAATTgtaaggacaa ... catgttgtagGAACAAGCTTCGGGAATCAAGGAACGCCATATCTTCAGCTGACATCTCTGA
EST: ACTCGAAGGAATTTCATCCAAGAACCCGTTGGAGAAAAGAATT GAACAAGCTTCGGGAATCAAGGGAACGCCATATCTTCAGCTGACATCTCTEST: gi|113703193|gb|EE680697.1|EE680697
genomic: ACTCGAAGGAA-TTCAT-CAAGAAACAGTTGGAG-AAAGAATTgtaaggacaa ... catgttgtagGAACAAGCTTCGGGAATCAA-GGAACGCCATATCTTCAGCTGACATCTCT
EST: GTTACCGCCCACTCGAAGGAATTCATCAAGAAACAGTTGGAGAAAGAATT GAACAAGCTTCGGGAATCAAGGAACGCCATATCTTCAGCTGACATCTCTGAEST: gi|32944734|gb|CF049553.1|CF049553
genomic: GTTACCGCCCACTCGAAGGAATTCATCAAGAAACAGTTGGAGAAAGAATTgtaaggacaa ... catgttgtagGAACAAGCTTCGGGAATCAAGGAACGCCATATCTTCAGCTGACATCTCTGA
EST: GTTACCGCCCACTCGAAGGAATTCATCAAGAAACAGTTGGAGAAAGAATT GAACAAGCTTCGGGAATCAAGGAACGCCATATCTTCAGCTGACATCTCTGAEST: gi|60354603|gb|DN221576.1|DN221576
genomic: GTTACCGCCCACTCGAAGGAATTCATCAAGAAACAGTTGGAGAAAGAATTgtaaggacaa ... catgttgtagGAACAAGCTTCGGGAATCAAGGAACGCCATATCTTCAGCTGACATCTCTGA
EST: GTTACCGCCCACTCGAAGGAATTCATCAAGAAACAGTTGGAGAAAGAATT GAACAAGCTTCGGGAATCAAGGAACGCCATATCTTCAGCTGACATCTCTGAEST: gi|76287924|gb|DV027492.1|DV027492
genomic: GTTACCGCCCACTCGAAGGAATTCATCAAGAAACAGTTGGAGAAAGAATTgtaaggacaa ... catgttgtagGAACAAGCTTCGGGAATCAAGGAACGCCATATCTTCAGCTGACATCTCTGA
EST: TTACCGCCCACTCGAAAGGA-TTCATCAAGAAACAGTTGGAGAAAGAATT GAACAAGCTTCGGGGATCAAGGAACGCCATATCTTCAGCTGACATCTCTGAEST: gi|32939688|gb|CF044507.1|CF044507
genomic: TTACCGCCCACTCGAA-GGAATTCATCAAGAAACAGTTGGAGAAAGAATTgtaaggacaa ... catgttgtagGAACAAGCTTCGGGAATCAAGGAACGCCATATCTTCAGCTGACATCTCTGA
EST: GTTACCGCCCACTC-AAGGAATTCATCAAGAAACAGTTGGAGAAAGAATT GAACAAGCTTCGGGAATCAAGGAACGCCATATCTTCAGCTGACATCTCTGAEST: gi|71300379|gb|DR786255.1|DR786255
genomic: GTTACCGCCCACTCGAAGGAATTCATCAAGAAACAGTTGGAGAAAGAATTgtaaggacaa ... catgttgtagGAACAAGCTTCGGGAATCAAGGAACGCCATATCTTCAGCTGACATCTCTGA
EST: CGAAGGAATTCATCAAGAAACAGTTGGAGAAAGAATT GAACAAGCTTCGGGAATCAAGGAACGCCATATCTTCAGCTGACATCTCTGAEST: gi|78025960|gb|DV494347.1|DV494347
genomic: CGAAGGAATTCATCAAGAAACAGTTGGAGAAAGAATTgtaaggacaa ... catgttgtagGAACAAGCTTCGGGAATCAAGGAACGCCATATCTTCAGCTGACATCTCTGA
EST: GTTACCGCCCACTCGAAGGAATTCATCAAGAAACAGTTGGAGAAAGAATT GAACAAGCTTCGGGAATCAAGGAACGCCATATCTTCAGCTGACATCTCTGAEST: gi|71437117|gb|DR818167.1|DR818167
genomic: GTTACCGCCCACTCGAAGGAATTCATCAAGAAACAGTTGGAGAAAGAATTgtaaggacaa ... catgttgtagGAACAAGCTTCGGGAATCAAGGAACGCCATATCTTCAGCTGACATCTCTGA
EST: TTACCGCCCACTCGAAGGAATTCATNCA-GAAACAGTTGGAGAAAGAATT GAACA-GCTTCGGGAAATCA-GGAACGCCATATCTTCAGCTGACATCTCTGEST: gi|45567417|gb|CK985561.1|CK985561
genomic: TTACCGCCCACTCGAAGGAATTCAT-CAAGAAACAGTTGGAGAAAGAATTgtaaggacaa ... catgttgtagGAACAAGCTTCGGGAA-TCAAGGAACGCCATATCTTCAGCTGACATCTCTG
EST: GTTACCGCCCACTCGAAGGAATTCATCAAGAAACAGTTGGAGAAAGAATT GAACAAGCTTCGGGAATCAAGGAACGCCATATCTTCAGCTGACATCTCTGAEST: gi|101381890|gb|EB813002.1|EB813002
genomic: GTTACCGCCCACTCGAAGGAATTCATCAAGAAACAGTTGGAGAAAGAATTgtaaggacaa ... catgttgtagGAACAAGCTTCGGGAATCAAGGAACGCCATATCTTCAGCTGACATCTCTGA
EST: GTTACCGCCCACTCGAAGGAATTCATCAAGAAACAGTTGGAGAAAGAATT GAACAAGCTTCGGGAATCAAGGAACGCCATATCTTCAGCTGACATCTCTGAEST: gi|16922835|gb|BM075827.1|BM075827
genomic: GTTACCGCCCACTCGAAGGAATTCATCAAGAAACAGTTGGAGAAAGAATTgtaaggacaa ... catgttgtagGAACAAGCTTCGGGAATCAAGGAACGCCATATCTTCAGCTGACATCTCTGA
EST: GTTACCGCCCACTCGAAGGAATTCATCAAGAAACAGTTGGAGAAAGAATT GAACAAGCTTCGGGAATCAAGGAACGCCATATCTTCAGCTGACATCTCTGAEST: gi|71313715|gb|DR793447.1|DR793447
genomic: GTTACCGCCCACTCGAAGGAATTCATCAAGAAACAGTTGGAGAAAGAATTgtaaggacaa ... catgttgtagGAACAAGCTTCGGGAATCAAGGAACGCCATATCTTCAGCTGACATCTCTGA
EST: GTTACCGCCCACTCGAAGGAATTCATCAAGAAACAGTTGGAGAAAGAATT GAACAAGCTTCGGGAATCAAGGAACGCCATATCTTCAGCTGACATCTCTGA
genomic: GTTACCGCCCACTCGAAGGAATTCATCAAGAAACAGTTGGAGAAAGAATTgtaaggacaa ... catgttgtagGAACAAGCTTCGGGAATCAAGGAACGCCATATCTTCAGCTGACATCTCTGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TAGTTAAGAAAAGGATCCCTGTGCTTATATTCTGCAACAAGACGGATAAAGTTACCGCCCACTCGAAGGAATTCATCAAGAAACAGTTGGAGAAAGAATTgtaaggacaactctccaagtcccaacatttatcgtacttgcatacctagaattagaaattctaaactcagtagtgcatgctgcataaatgctgtgatcat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA