1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TATTTCAAGTGACGGTGTTTGGGATGCTTTGACTGCGGAAATGGCTTTTAGATGTGCACGGGGGCTTCCTCCTGAGGCTGCAGCCGAGCAAATTGTTAAAgtacaacactagtacccttcccagcccatcttaacacaaggtctaaaatcctcagttgtactgttcctaactggtgtactgtttgcag
species | Zea mays |
transcript | GRMZM2G015610_T02 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GATGTGCACGGGGGCTTCCTCCTGAGGCTGCAGCCGAGCAAATTGTTAAA GAAGCAGTTGAATCAAAAGGATTGAGAGATGATACAACTTGCATTGTCATTEST: gi|211452532|gb|FK957877.1|FK957877
genomic: GATGTGCACGGGGGCTTCCTCCTGAGGCTGCAGCCGAGCAAATTGTTAAAgtacaacact ... ctgtttgcagGAAGCAGTTGAATCAAAAGGATTGAGAGATGATACAACTTGCATTGTCATT
EST: GATGTGCACGGGGGCTTCCTCCTGAGGCTGCAGCCGAGCAAATTGTTAAA GAAGCAGTTGAATCAAAAGGATTGAGAGATGATACAACTTGCATTGTCATTEST: gi|91869347|gb|EB400346.1|EB400346
genomic: GATGTGCACGGGGGCTTCCTCCTGAGGCTGCAGCCGAGCAAATTGTTAAAgtacaacact ... ctgtttgcagGAAGCAGTTGAATCAAAAGGATTGAGAGATGATACAACTTGCATTGTCATT
EST: GATGTGCACGGGGGCTTCCTCCTGAGGCTGCAGCCGAGCAAATTGTTAAA GAAGCAGTTGAATCAAAAGGATTGAGAGATGATACAACTTGCATTGTCATTEST: gi|32913202|gb|CF018014.1|CF018014
genomic: GATGTGCACGGGGGCTTCCTCCTGAGGCTGCAGCCGAGCAAATTGTTAAAgtacaacact ... ctgtttgcagGAAGCAGTTGAATCAAAAGGATTGAGAGATGATACAACTTGCATTGTCATT
EST: GATGTGCACGGGGGCTTCCTCCTGAGGCTGCAGCCGAGCAAATTGTTAAA GAAGCAGTTGAATCAAAAGGATTGAGAGATGATACAACTTGCATTGTCATTEST: gi|148930783|gb|EC873124.2|EC873124
genomic: GATGTGCACGGGGGCTTCCTCCTGAGGCTGCAGCCGAGCAAATTGTTAAAgtacaacact ... ctgtttgcagGAAGCAGTTGAATCAAAAGGATTGAGAGATGATACAACTTGCATTGTCATT
EST: GATGTGCACGGGGGCTTCCTCCTGAGGCTGCAGCCGAGCAAATTGTTAAA GAAGCAGTTGAATCAAAAGGATTGAGAGATGATACAACTTGCATTGTCATT
genomic: GATGTGCACGGGGGCTTCCTCCTGAGGCTGCAGCCGAGCAAATTGTTAAAgtacaacact ... ctgtttgcagGAAGCAGTTGAATCAAAAGGATTGAGAGATGATACAACTTGCATTGTCATT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TATTTCAAGTGACGGTGTTTGGGATGCTTTGACTGCGGAAATGGCTTTTAGATGTGCACGGGGGCTTCCTCCTGAGGCTGCAGCCGAGCAAATTGTTAAAgtacaacactagtacccttcccagcccatcttaacacaaggtctaaaatcctcagttgtactgttcctaactggtgtactgtttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG