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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCCATGGAGACCCAGAAGCAGCTGACATAGTTTTTACTTCAGGAGCAGATATCGTTGTGGTTGGCATTAACATAACAACACAAGTCTGCCTGACAGgttggttcattggtagtctattgtgtatagttcaagttctggggtaaactatattcaccatgtgagattcattgttttag

Basic information

species Zea mays
transcript GRMZM2G015344_T02
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G015344_T02 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os08g44370.1 (Oryza sativa), 5'ss of exon 6
ATCCATGGAGACCCAGAAGCAGCTGACATAGTTTTTACTTCAGGAGCAGATATCGTTGTGGTTGGCATTAACATAACAACACAAGTCTGCCTGACAGgttggttcattggtagtctattgtgtatagttcaagttc-----tggggtaaactatattcaccatgtgagattcattgttttag-
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ATATATGGAGATCCAGAAGCAGCTGACATAGTTTTTACCTCAGGAGCAGATGTTGACGTGGTTGGCATTAACATAACAACTCAAGTCTGTTTTACAGgtttgttccttgatagtgtcatttgcatggttcgagtccagctgtggggtcaattatattcatcaagtaaaatctgtttctttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78105410|gb|DV523828.1|DV523828
EST:     AGATATCGTTGTGGGTGGCATTAACATAACAACACAAGTCTGCCTGACAG                         ATGAGGATCTCTTGGAGCTA
genomic: AGATATCGTTGTGGTTGGCATTAACATAACAACACAAGTCTGCCTGACAGgttggttcat ... attgttttagATGAGGATCTCTTGGAGCTA