1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
AAAAGAAACCAAAGGAAGGTGACAGTATTGTTCAGGATGCTCCTGCAGATATTCCTTCCCTTCTAGAATTGAAGCGCGTCTACTACGAACTGATGATTCGgtatgtcatcgttagatcgtctacctgactgcttctggaaccgctaatctctttgttctatttaacgctatgcttcacaatgacattttatattggagcc...
species | Zea mays |
transcript | GRMZM2G014116_T02 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: ATTCCTTCCCTTCTAGAATTGAAGCGCGTCTACTACGAACTGATGATTCG TTATTACTCTCACAACAATGATTACTTGGAAATCTGCCGTTGTTACAAGGCEST: gi|31355001|gb|CD439358.1|CD439358
genomic: ATTCCTTCCCTTCTAGAATTGAAGCGCGTCTACTACGAACTGATGATTCGgtatgtcatc ... ttcttcacagTTATTACTCTCACAACAATGATTACTTGGAAATCTGCCGTTGTTACAAGGC
EST: ATTCCTTCCCTTCTAGAATTGAAGCGCGTCTACTACGAACTGATGATTCG TTATTACTCTCACAACAATGATTACTTGGAAATCTGCCGTTGTTACAAGGCEST: gi|7216589|gb|AW562711.1|AW562711
genomic: ATTCCTTCCCTTCTAGAATTGAAGCGCGTCTACTACGAACTGATGATTCGgtatgtcatc ... ttcttcacagTTATTACTCTCACAACAATGATTACTTGGAAATCTGCCGTTGTTACAAGGC
EST: ATTCCTTCCCTTCTAGAATTGAAGCGCGTCTACTACGAACTGATGATTCG NTATTACTCTCACAACAATGATTACTTGGAAATCTGCCGTTGNTACAAGGCEST: gi|31355164|gb|CD439521.1|CD439521
genomic: ATTCCTTCCCTTCTAGAATTGAAGCGCGTCTACTACGAACTGATGATTCGgtatgtcatc ... ttcttcacagTTATTACTCTCACAACAATGATTACTTGGAAATCTGCCGTTGTTACAAGGC
EST: ATTCCTTCCCTTCTAGAATTGAAGCGCGTCTACTACGAACTGATGATTCG TTATTACTCTCACAACAATGATTACTTGGAAATCTGCCGTTGTTACAAGGCEST: gi|211150172|gb|FL276377.1|FL276377
genomic: ATTCCTTCCCTTCTAGAATTGAAGCGCGTCTACTACGAACTGATGATTCGgtatgtcatc ... ttcttcacagTTATTACTCTCACAACAATGATTACTTGGAAATCTGCCGTTGTTACAAGGC
EST: ATTCCTTCCCTTCTAGAATTGAAGCGCGTCTACTACGAACTGATGATTCG TTATTACTCTCACAACAATGATTACTTGGAAATCTGCCGTTGTTACAAGGCEST: gi|31355423|gb|CD439780.1|CD439780
genomic: ATTCCTTCCCTTCTAGAATTGAAGCGCGTCTACTACGAACTGATGATTCGgtatgtcatc ... ttcttcacagTTATTACTCTCACAACAATGATTACTTGGAAATCTGCCGTTGTTACAAGGC
EST: ATTCCTTCCCTTCTAGAATTGAAGCGCGTCTACTACGAACTGATGATTCG TTATTACTCTCACAACAATGATTACTTGGAAATCTGCCEST: gi|14202839|gb|BG836516.1|BG836516
genomic: ATTCCTTCCCTTCTAGAATTGAAGCGCGTCTACTACGAACTGATGATTCGgtatgtcatc ... ttcttcacagTTATTACTCTCACAACAATGATTACTTGGAAATCTGCC
EST: ATTCCTTCCCTTCTAGAATTGAAGCGCGTCTACTACGAACTGATGAWTCG TTATTA-TCTCACAACAATGATTACTTGGAA-TCTGCGGT-GTTACAEST: gi|9953978|gb|BE640561.1|BE640561
genomic: ATTCCTTCCCTTCTAGAATTGAAGCGCGTCTACTACGAACTGATGATTCGgtatgtcatc ... ttcttcacagTTATTACTCTCACAACAATGATTACTTGGAAATCTGCCGTTGTTACA
EST: ATTCCTTCCCTTCTAGAATTGAAGCGCGTCTACTACGAACTGATGATTCG TTATTACTCTCACAACAATGATTACTTGGAAATCTGCCGTTGTTACAAGGCEST: gi|31350034|gb|CD434391.1|CD434391
genomic: ATTCCTTCCCTTCTAGAATTGAAGCGCGTCTACTACGAACTGATGATTCGgtatgtcatc ... ttcttcacagTTATTACTCTCACAACAATGATTACTTGGAAATCTGCCGTTGTTACAAGGC
EST: ATTCCTTCCCTTCTAGAATTGAAGCGCGTCTACTACGAACTGATGATTCG TTATTACTCTCACAACAATGATTACTTGGAAATCTGCCGTTGTTTACA-GGEST: gi|213188018|gb|FM188229.1|FM188229
genomic: ATTCCTTCCCTTCTAGAATTGAAGCGCGTCTACTACGAACTGATGATTCGgtatgtcatc ... ttcttcacagTTATTACTCTCACAACAATGATTACTTGGAAATCTGCCGTTGTT-ACAAGG
EST: ATTCCTTCCCTTCTAGAATTGAAGCGCGTCTACTACGAACTGATGATTCG TTATTACTCTCACAACAATGATTACTTGGAAATCTGCCGTTGTTACAAGGCEST: gi|26457612|gb|CA829195.1|CA829195
genomic: ATTCCTTCCCTTCTAGAATTGAAGCGCGTCTACTACGAACTGATGATTCGgtatgtcatc ... ttcttcacagTTATTACTCTCACAACAATGATTACTTGGAAATCTGCCGTTGTTACAAGGC
EST: ATTCCTTCCCTTCTAGAATTGAAGCGCGTCTACTACGAACTGATGATTCG TTATTACTCTCACAACAATGATTACTTGGAAATCTGCCGTTGTTACAAGGCEST: gi|71448354|gb|DR829404.1|DR829404
genomic: ATTCCTTCCCTTCTAGAATTGAAGCGCGTCTACTACGAACTGATGATTCGgtatgtcatc ... ttcttcacagTTATTACTCTCACAACAATGATTACTTGGAAATCTGCCGTTGTTACAAGGC
EST: ATTCCTTCCCTTCTAGAATTGAAGCGCGTCTACTACGAACTGATGATTCG TTATTACTCTCACAACAATGATTACTTGGGAATCTGCCCGTTGTAACA-GGEST: gi|213183945|gb|FM195837.1|FM195837
genomic: ATTCCTTCCCTTCTAGAATTGAAGCGCGTCTACTACGAACTGATGATTCGgtatgtcatc ... ttcttcacagTTATTACTCTCACAACAATGATTACTTGGAAATCTGCC-GTTGTTACAAGG
EST: ATTCCTTCCCTTCTAGAATTGAAGCGCGTCTACTACGAACTGATGATTCG TTATTACTCTCACAACAATGATTACTTGGAAATCTGCCGTTGTTACAAGGCEST: gi|31354458|gb|CD438815.1|CD438815
genomic: ATTCCTTCCCTTCTAGAATTGAAGCGCGTCTACTACGAACTGATGATTCGgtatgtcatc ... ttcttcacagTTATTACTCTCACAACAATGATTACTTGGAAATCTGCCGTTGTTACAAGGC
EST: ATTCCTTCCCTTCTAGAATTGAAGCGCGTCTACTACGAACTGATGATTCG TTATTACTCTCACAACAATGATTACTTGGAAATCTGCCGTTGTTACAAGGC
genomic: ATTCCTTCCCTTCTAGAATTGAAGCGCGTCTACTACGAACTGATGATTCGgtatgtcatc ... ttcttcacagTTATTACTCTCACAACAATGATTACTTGGAAATCTGCCGTTGTTACAAGGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAAAGAAACCAAAGGAAGGTGACAGTATTGTTCAGGATGCTCCTGCAGATATTCCTTCCCTTCTAGAATTGAAGCGCGTCTACTACGAACTGATGATTCGgtatgtcatcgttagatcgtctacctgactgcttctggaaccgctaatctctttgttctatttaacgctatgcttcacaatgacattttatattggagcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC