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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCTGATACGTCCCTTTTTAAAGAAGCTTTAGTGAGCTTGGCAAAAGATTCTGGTCTTCATCCTTTAGTTCCTTACTTTTCCTACTTCATTGCAGACGAGgttgtacagtagctttcttgcttttggtgggtttctttttatatgacattacttagtgtgtatccatttgaatttcag

Basic information

species Zea mays
transcript GRMZM2G013908_T03
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G013908_T01 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os01g32750.1 (Oryza sativa), 5'ss of exon 6
ATCTGATACGTCCCTTTTTAAAGAAGCTTTAGTGAGCTTGGCAAAAGATTCTGGTCTTCATCCTTTAGTTCCTTACTTTTCCTACTTCATTGCAGACGAGgttgtacagtagctttcttgcttttggtgggtttctttttatatgacattactt---agtgtgtatccatttgaatttcag
|||||| || ||  |||||| |||||| |||||||||||  ||| ||| || || |||||||| || ||||||||||||||||||||||| || || ||||||||    || ||| ||  |||   ||   | |  |   |  || |||| | |   | ||| ||||| | | ||||||||
ATCTGAAACCTCAGTTTTTAGAGAAGCATTAGTGAGCTTATCAAGAGACTCAGGCCTTCATCCGTTGGTTCCTTACTTTTCCTACTTCATCGCCGATGAGgttgt----tatcttgct--cttagagtctatattgtgcgagctggcattgccttacaatgtatatccttat-aatttcag

upper sequence: GRMZM2G013908_T01 (Zea mays), 5'ss of exon 6
lower sequence: Vv19s0090g01310.t01 (Vitis vinifera), 5'ss of exon 6
ATCTGATACGTCCCTTTTTAAAGAAGCTTTAGTGAGCTTGGCAAAAGATTCTGGTCTTCATCCTTTAGTTCCTTACTTTTCCTACTTCATTGCAGACGAGgt---tgtacagtagctttcttgcttttggtgggtttctt------------tttatatgacattacttagtgtgtatccatttgaatttcag--------------------
||||||| |   ||| ||||||||||| |||||||||||||||| ||| || ||  ||||||||||||||||||| ||| | || |||||||| || |||||   | |  ||    | |||||  | | | |   | ||             |||| || || ||   | |  | ||   | || | | | |                     
ATCTGATTCTATCCTATTTAAAGAAGCATTAGTGAGCTTGGCAACAGACTCAGGAATTCATCCTTTAGTTCCTTATTTTACATATTTCATTGCTGATGAGgtaagtcttgagggcatatcttggatcttgagaactactaaaatattttgggtttaaataactttttattgcttatactgactttattattattttttttcccaaaatttcag

upper sequence: GRMZM2G013908_T01 (Zea mays), 5'ss of exon 6
lower sequence: Vv12s0059g00300.t01 (Vitis vinifera), 5'ss of exon 6
ATCTGATACGTCCCTTTTTAAAGAAGCTTTAGTGAGCTTGGCAAAAGATTCTGGTCTTCATCCTTTAGTTCCTTACTTTTCCTACTTCATTGCAGACGAGgttgtacagtagctttcttgcttttggtgggtttctttttatatgacatt--acttagtgtgtatccatttgaatttcag-----------------
 || ||  |  ||||||||||||| || |||||||||||||| | ||| || || ||||| || ||||||||||| ||| | ||||||||  | || ||||| ||    ||    | |   ||  |     | |   ||   | || ||    |||| ||| |    |||  |||| | |                 
GTCAGACTCTGCCCTTTTTAAAGAGGCATTAGTGAGCTTGGCTACAGACTCAGGACTTCACCCATTAGTTCCTTATTTTACATACTTCATCTCCGATGAGgtagtttt-taaagctataatttcagcataatatgaattgggaggaaatgtggcttattgt-tgctaattccaattgctgcttctcaacaatgctag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76283812|gb|DV023380.1|DV023380
EST:     CTGGTCTTCATCCTTTAGTTCCTTACTTTTCCTACTTCATTGCAGACGAG                         GTTACCCGGAGTTTGGGTGATCTTCCTGTTTTACTTGCTCTAATGAGAGTA
genomic: CTGGTCTTCATCCTTTAGTTCCTTACTTTTCCTACTTCATTGCAGACGAGgttgtacagt ... tgaatttcagGTTACCCGGAGTTTGGGTGATCTTCCTGTTTTACTTGCTCTAATGAGAGTA
EST: gi|76925484|gb|DV170465.1|DV170465
EST:     CTGGTCTTCATCCTTTAGTTCCTTACTTTTCCTACTTCATTGCAGACGAG                         GTTACCCGGAGTTTGGGTGATCTTCCTGTTTTACTTGCTCTAATGAGAGTA
genomic: CTGGTCTTCATCCTTTAGTTCCTTACTTTTCCTACTTCATTGCAGACGAGgttgtacagt ... tgaatttcagGTTACCCGGAGTTTGGGTGATCTTCCTGTTTTACTTGCTCTAATGAGAGTA