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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCAGGTTACCCGGAGTTTGGGTGATCTTCCTGTTTTACTTGCTCTAATGAGAGTAGTCCAAAGTCTTCTCCGTAATCCACATATTCATATTGAACCTTATgtaagtagtaaaccataaggttttgatagttcatgtgcgcgacttatttttttgccattttatatattcttttcgccgtattagtactaaattagcagcatttgtcttgatctgtag

Basic information

species Zea mays
transcript GRMZM2G013908_T02
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G013908_T02 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os01g32750.1 (Oryza sativa), 5'ss of exon 7
TCAGGTTACCCGGAGTTTGGGTGATCTTCCTGTTTTACTTGCTCTAATGAGAGTAGTCCAAAGTCTTCTCCGTAATCCACATATTCATATTGAACCTTATgtaagtagtaaaccataaggttttgatagttcatgtgcgcgacttatttt---tttgccattttatatat-tcttttcgccgtattagtactaaattagcagcatttgtcttgatctgtag
    |||||||||||||| |||||||||||||||||| ||||||| ||| | ||||||||||| || || |  ||||| || |||||||||||||| ||||||||| ||  | ||      ||||||  ||| |     | | || ||||   |||  ||||  | |  | | ||| |  | ||||  | |||||  | ||  |||| |||||||    ||
----GTTACCCGGAGTTTAGGTGATCTTCCTGTTTTATTTGCTCTCATGCGTGTAGTCCAAAGCCTCCTACACAATCCCCACATTCATATTGAACCATATgtaagtggttgatcagtcaactttgatgcttc-tactttctagttgttttgtttttagcattgcacacttatgtttgcagcatatttctgctaaagaaacaaaatttctcttgattgccag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18661346|gb|BM501365.1|BM501365
EST:     GAGTAGTCCAAAGTCTTCTCCGTAATCCACATATTCATATTGAACCTTAT                         TTGCACCAGCTGATGCCATCAATGATCACTTGCATTGTTGCGAAAAGGCTA
genomic: GAGTAGTCCAAAGTCTTCTCCGTAATCCACATATTCATATTGAACCTTATgtaagtagta ... tgatctgtagTTGCACCAGCTGATGCCATCAATGATCACTTGCATTGTTGCGAAAAGGCTA
EST: gi|26455852|gb|CA827435.1|CA827435
EST:     CTTCTCCGTAATCCACATATTCATATTGAACCTTAT                         TTGCACCAGCTGATGCCATCAATGATCACTTGCATTGTTGCGAAAAGGCTA
genomic: CTTCTCCGTAATCCACATATTCATATTGAACCTTATgtaagtagta ... tgatctgtagTTGCACCAGCTGATGCCATCAATGATCACTTGCATTGTTGCGAAAAGGCTA
EST: gi|60351712|gb|DN218685.1|DN218685
EST:     GAGTAGTCCAAAGTCTTCTCCGTAATCCACATATTCATATTGAACCTTAT                         TTGCACCAGCTGATGCCATCAATGATCACTTGCATTGTTGCGAAAAGGCTA
genomic: GAGTAGTCCAAAGTCTTCTCCGTAATCCACATATTCATATTGAACCTTATgtaagtagta ... tgatctgtagTTGCACCAGCTGATGCCATCAATGATCACTTGCATTGTTGCGAAAAGGCTA