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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTCATCCTTCACAAACATGCTTTCTATCATCGATCGACTTGCATACTCAATACTCTTACCAGgtaattaaagaagctgtgctgagttgatctataaaaggaggtgttttttatattaaaaatgataggacttctatagtattcatttttttatgtgacaact...

Basic information

species Zea mays
transcript GRMZM2G013625_T02
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78115431|gb|DV533819.1|DV533819
EST:     AAACATGCTTTCTATCATCGATCGACTTGCATACTCAATACTCTTACCAG                         GTTATGTTACCAGAGGCTGTTGCAATTGTGGTCGCACCCACAGATCCAACC
genomic: AAACATGCTTTCTATCATCGATCGACTTGCATACTCAATACTCTTACCAGgtaattaaag ... attcttgtagGTTATGTTACCAGAGGCTGTTGCAATTGTGGTCGCACCCACAGATCCAACC
EST: gi|91053085|gb|EB163503.1|EB163503
EST:     AAACATGCTTTCTATCATCGATCGACTTGCATACTCAATACTCTTACCAG                         GTTATGTTACCAGAGGCTGTTGCAATTGTGGTCGCACCCACAGATCCAACC
genomic: AAACATGCTTTCTATCATCGATCGACTTGCATACTCAATACTCTTACCAGgtaattaaag ... attcttgtagGTTATGTTACCAGAGGCTGTTGCAATTGTGGTCGCACCCACAGATCCAACC
EST: gi|71767635|gb|DR965572.1|DR965572
EST:     AAACATGCTTTCTATCATCGATCGACTTGCATACTCAATACTCTTACCAG                         GTTATGTTACCAGAGGCTGTTGTCA-TTGTGGTCGCACCCACAGATCCAAC
genomic: AAACATGCTTTCTATCATCGATCGACTTGCATACTCAATACTCTTACCAGgtaattaaag ... attcttgtagGTTATGTTACCAGAGGCTGTTG-CAATTGTGGTCGCACCCACAGATCCAAC