1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
TACAAGCCGTGAATTGGCACCAGCAATTACTTTGTTACAGTTATACTTGAGTTCATCCAAGCCTGTGCTTCGATTTGCTGCTGTCCGGACTCTCAATAAGgttatccttacatggccgtcaagcttagctgttcaaaattattcctgcaatatttgtttcttgattttccattatatcgcag
species | Zea mays |
transcript | GRMZM2G012501_T02 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GTTCATCCAAGCCTGTGCTTCGATTTGCTGCTGTCCGGACTCTCAATAAG GTTGCTAGGACACGACCTCTGGCGGTGACAAACTGCAATGTGGACTTGGAGEST: gi|67030306|gb|CO459055.1|CO459055
genomic: GTTCATCCAAGCCTGTGCTTCGATTTGCTGCTGTCCGGACTCTCAATAAGgttatcctta ... tatatcgcagGTTGCTAGGACACGACCTCTGGCGGTGACAAACTGCAATGTGGACTTGGAG
EST: GTTCATCCAAGCCTGTGCTTCGATTTGCTGCTGTCCGGACTCTCAATAAG GTTGCTAGGACACGACCTCTGGCGGTGACAAACTGCAATGTGGACTTGGAGEST: gi|32945171|gb|CF049990.1|CF049990
genomic: GTTCATCCAAGCCTGTGCTTCGATTTGCTGCTGTCCGGACTCTCAATAAGgttatcctta ... tatatcgcagGTTGCTAGGACACGACCTCTGGCGGTGACAAACTGCAATGTGGACTTGGAG
EST: GTTCATCCAAGCCTGTGCTTCGATTTGCTGCTGTCCGGACTCTCAATAAG GTTGCTAGGACACGACCTCTGGCGGTGACAAACTGCAATGTGGACTTGGAG
genomic: GTTCATCCAAGCCTGTGCTTCGATTTGCTGCTGTCCGGACTCTCAATAAGgttatcctta ... tatatcgcagGTTGCTAGGACACGACCTCTGGCGGTGACAAACTGCAATGTGGACTTGGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TACAAGCCGTGAATTGGCACCAGCAATTACTTTGTTACAGTTATACTTGAGTTCATCCAAGCCTGTGCTTCGATTTGCTGCTGTCCGGACTCTCAATAAGgttatccttacatggccgtcaagcttagctgttcaaaattattcctgcaatatttgtttcttgattttccattatatcgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT