1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
GGGCACACTGCCATCAATGAACTCATTAGGGCGCTGGTTTGGGGAGCCTGTAAGGGCTGCTATTCTGCAAACCAATgtaatcacagttttttatctaacaaattcatgttgatgtgctgtcaggcaatggaaactcaggtcaccgcttgtctttttacatcgcag
species | Zea mays |
transcript | GRMZM2G011456_T01 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TAGGGCGCTGGTTTGGGGAGCCTGTAAGGGCTGCTATTCTGCAAACCAAT GCTTTTCTTACAAATGCAAGAGGATATCCTTGTTTATCAAAGCGGCATCAGEST: gi|71300983|gb|DR786520.1|DR786520
genomic: TAGGGCGCTGGTTTGGGGAGCCTGTAAGGGCTGCTATTCTGCAAACCAATgtaatcacag ... tacatcgcagGCTTTTCTTACAAATGCAAGAGGATATCCTTGTTTATCAAAGCGGCATCAG
EST: TAGGGCGCTGGTTTGGGGAGCCTGTAAGGGCTGCTATTCTGCAAACCAAT GCTTTTCTTACAAATGCAAGAGGATATCCTTGTTTATCAAAGCGGCATCAGEST: gi|74233408|gb|DT641322.1|DT641322
genomic: TAGGGCGCTGGTTTGGGGAGCCTGTAAGGGCTGCTATTCTGCAAACCAATgtaatcacag ... tacatcgcagGCTTTTCTTACAAATGCAAGAGGATATCCTTGTTTATCAAAGCGGCATCAG
EST: TAGGGCGCTGGTTTGGGGAGCCTGTAAGGGCTGCTATTCTGCAAACCAAT GCTTTTCTTACAAATGCAAGAGGATATCCTTGTTTAEST: gi|78117239|gb|DV535626.1|DV535626
genomic: TAGGGCGCTGGTTTGGGGAGCCTGTAAGGGCTGCTATTCTGCAAACCAATgtaatcacag ... tacatcgcagGCTTTTCTTACAAATGCAAGAGGATATCCTTGTTTA
EST: TANGGCGCTGGTTTGGGGAGCCTGTAGGGGCTGCTATTCTGCAAACCAAT GCTTTTCTTACAAATGNCA-GAGGATATCCTTGTTTATCAAAGCGGCATCA
genomic: TAGGGCGCTGGTTTGGGGAGCCTGTAAGGGCTGCTATTCTGCAAACCAATgtaatcacag ... tacatcgcagGCTTTTCTTACAAATG-CAAGAGGATATCCTTGTTTATCAAAGCGGCATCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGGCACACTGCCATCAATGAACTCATTAGGGCGCTGGTTTGGGGAGCCTGTAAGGGCTGCTATTCTGCAAACCAATgtaatcacagttttttatctaacaaattcatgttgatgtgctgtcaggcaatggaaactcaggtcaccgcttgtctttttacatcgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT