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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCTGATGATGATCGAAAGTACATGAGTAAATGCCACATTGCTGTATCATCCTGCATCTTTGGAAATTCTGATCGACTGAGGACTCCATTTAGCAAAACGgtatgatatttttgtggacactaagttcttgactaaatttttcacgcttcctgtgtcctgcttacgttgcattcgacagcttatgtcggttttctctagg...

Basic information

species Zea mays
transcript GRMZM2G011404_T02
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G011404_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os11g09170.1 (Oryza sativa), 5'ss of exon 3
ATCTGATGATGATCGAAAGTACATGAGTAAATGCCACATTGCTGTATCATCCTGCATCTTTGGAAATTCTGATCGACTGAGGACTCCATTTAGCAAAACGgtatgatatttttgtggac-actaagttcttgactaaatttttcacgcttcctgtgtcctgcttacgttgcattcgac--agcttatgtcggttttctctagg
 || || ||  |  ||||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||| |||| |||||| ||| | ||||| ||||| | ||||| || || |  ||  || |||  ||||| |        ||    |||||| |  ||| ||  | |   | ||  ||||  | |  |     
CTCAGAGGAAAACAGAAAGTACATGAGCAAATGCCACATTGCAGTATCTTCCTGCATCTTTGGAAATTCTGATCGTCTGAAGACTCCTTTTGGGAAAACAgtatgttctttttctgtaccaacaaactcctgaaaaaattatg---atacccctaatcctgcatgagttacaaccaatgtaactcttgtcaatgtatttattt

upper sequence: GRMZM2G011404_T01 (Zea mays), 5'ss of exon 3
lower sequence: AT4G09630.1 (Arabidopsis thaliana), 5'ss of exon 3
ATCTGATGATGATCGAAAGTACATGAGTAAATGCCACATTGCTGTATCATCCTGCATCTTTGGAAATTCTGATCGACTGAGGACTCCATTTAGCAAAACGgtatgatatttttgtggacactaagttcttgactaaatttttcacgcttcctgtgtcctgcttacgttgcattcgacagcttatgtcggttttctctagg-----
  | || ||||||   || || || |||||||| |||||||||||   |||||| ||||||||||| ||||||||  |||||  |||   ||  |||| |||||||||    |||   | ||   |   |   |  || ||  |   ||| | |    | |     | | ||| || |        |  | ||||||        
GACAGAAGATGATGCTAACTATATCAGTAAATGTCACATTGCTGTGATATCCTGTATCTTTGGAAACTCTGATCGCTTGAGGCATCCTGCTAATAAAATGgtatgataa---tgtaagcccttgat--gtattttcatgttgtagttttcttcttatttccacctctagaatttgaaattcctaaccactattctctgttagcat