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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCTAGGCATGTAGTCCAAAATATCAATCTTGCTGGTGGTAGCTTCTTAGGAGTCTCTCGCGGTGGTGCAAACATTTCAGACATTGTTGACAGTATTCAGgcaagtgtatttccttctgttactttggaaaatatgtctacaataattactaactgaaagattcgtcaacttaatttcgacaatgcacattcag

Basic information

species Zea mays
transcript GRMZM2G009591_T01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G009591_T01 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os10g26570.1 (Oryza sativa), 5'ss of exon 7
TTCTAGGCATGTAGTCCAAAATATCAATCTTGCTGGTGGTAGCTTCTTAGGAGTCTCTCGCGGTGGTGCAAACATTTCAGACATTGTTGACAGTATTCAGgcaagtgtatttccttctgttactttggaaaatatgtctacaataa--ttactaactgaaagattcgtcaacttaatttcgacaatgcacattcag
|  |||||| || ||||| |||||||||||||||||||| || ||||||||||| ||||| ||||| ||||| || ||||||||||| ||||| || |||||| |  ||  || ||||   | ||   || |||| | ||| || |  | |   ||  ||| | |  || | || ||||  |||   |||||||||
TAATAGGCAAGTTGTCCAGAATATCAATCTTGCTGGTGGAAGTTTCTTAGGAGTTTCTCGTGGTGGAGCAAATATCTCAGACATTGTCGACAGCATACAGgcatgaatacatcattctacaa-ttcaaaatatatttttacgatgaactgatgcacaaaaaaacttatcgatttgatttttacataccacattcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211158478|gb|FL301953.1|FL301953
EST:     GAGTCTCTCGCGGTGGTGCAAACATTTCARACATTGTTGACAGTATTCAG                         GCTAGGAGGCTTGATATGCTATTTGTGCTTGGTGGAAATGGAACACATGCT
genomic: GAGTCTCTCGCGGTGGTGCAAACATTTCAGACATTGTTGACAGTATTCAGgcaagtgtat ... gcacattcagGCTAGGAGGCTTGATATGCTATTTGTGCTTGGTGGAAATGGAACACATGCT
EST: gi|67014533|gb|CO443282.1|CO443282
EST:     GAGTCTCTCGCGGTGGTGCAAACATTTCAGACATTGTTGACAGTATTCAG                         GCTAGGAGGCTTGATATGCTATTTGTGCTTGGTGGAAATGGAACACATGCT
genomic: GAGTCTCTCGCGGTGGTGCAAACATTTCAGACATTGTTGACAGTATTCAGgcaagtgtat ... gcacattcagGCTAGGAGGCTTGATATGCTATTTGTGCTTGGTGGAAATGGAACACATGCT
EST: gi|211160056|gb|FL301955.1|FL301955
EST:     GAGTCTCTCGCGGTGGTGCAAACATTTCAGACATTGTNGACAGTATTCAG                         GCTAGGAGGCTTGATATGCTATTTGTGCTTGGNGGAAATGGAACACATGCT
genomic: GAGTCTCTCGCGGTGGTGCAAACATTTCAGACATTGTTGACAGTATTCAGgcaagtgtat ... gcacattcagGCTAGGAGGCTTGATATGCTATTTGTGCTTGGTGGAAATGGAACACATGCT