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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATGGTCAGCCGATTAAAGTCAATTGGGCATATACAAGTACTCCGAGGGAGGGCACATCAGgtttggaactgaagctgaagtgctgaaataatcctgtattttatatttgtattttacttggttcaaatcatgcaggtatgtgaatgtatggtttctgaattctaagctttggtggtgaatcttcatctatgcag

Basic information

species Zea mays
transcript GRMZM2G008611_T01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G008611_T01 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os11g40510.1 (Oryza sativa), 5'ss of exon 5
GTATGGTCAGCCGATTAAAGTCAATTGGGCATATACAAGTACTCCGAGGGAGGGCACATCAGgtttggaactgaagctgaagtgctgaaataatcctgtattttatatttgtattttacttggttcaaatcatgcaggtatgtgaatgtatggtttctgaattctaagctttggtggtgaatcttcatctatgcag
|| ||| ||||| || |||||||||||||||||| |||||||||  || ||||  |||||||||| |||||||||    || || | ||||  ||     ||||  | || |    |  |  || |      || |   |||||||| |  | | |   ||||   ||||||| || ||  | |||||   |||||
GTTTGGCCAGCCAATAAAAGTCAATTGGGCATATGCAAGTACTCAAAGAGAGGATACATCAGgttgggaactgaaa---aactgtt-aaatgttc-----ttttgcaattat----tgttctgtactgtctgtgta--catgtgaatctgagttattaaaatt--gagctttgctgatgtctgttcattcttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32927422|gb|CF032234.1|CF032234
EST:     ACTCCGAGGGAGGGCACATCAG                         GTCATTTTAATATTTTTGTTGGGGATCTTTGCCCGGAAGTCACTGATGCTA
genomic: ACTCCGAGGGAGGGCACATCAGgtttggaact ... atctatgcagGTCATTTTAATATTTTTGTTGGGGATCTTTGCCCGGAAGTCACTGATGCTA
EST: gi|32940921|gb|CF045740.1|CF045740
EST:     TACTCCGAGGGAGGGCACATCAG                         GTCATTTTAATATTTTTGTTGGGGATCTTTGCCCGGAAGTCACTGATGCTA
genomic: TACTCCGAGGGAGGGCACATCAGgtttggaact ... atctatgcagGTCATTTTAATATTTTTGTTGGGGATCTTTGCCCGGAAGTCACTGATGCTA
EST: gi|32927656|gb|CF032468.1|CF032468
EST:     ACTCCGAGGGAGGGCACATCAG                         GTCATTTTAATATTTTTGTTGGGGATCTTTGCCCGGAAGTCACTGATGCTA
genomic: ACTCCGAGGGAGGGCACATCAGgtttggaact ... atctatgcagGTCATTTTAATATTTTTGTTGGGGATCTTTGCCCGGAAGTCACTGATGCTA
EST: gi|32927013|gb|CF031825.1|CF031825
EST:     ACTCCGAGGGAGGGCACATCAG                         GTCATTTTAATATTTTTGTTGGGGATCTTTGCCCGGAAGTCACTGATGCTA
genomic: ACTCCGAGGGAGGGCACATCAGgtttggaact ... atctatgcagGTCATTTTAATATTTTTGTTGGGGATCTTTGCCCGGAAGTCACTGATGCTA
EST: gi|32850873|gb|CD990554.1|CD990554
EST:     GATTAAAGTCAATTGGGCATATACAAGTACTCCGAGGGAGGGCACATCAG                         GTCATTTTAATATTTTTGTTGGGGATCTTTGCCCGGAAGTCACTGATGCTA
genomic: GATTAAAGTCAATTGGGCATATACAAGTACTCCGAGGGAGGGCACATCAGgtttggaact ... atctatgcagGTCATTTTAATATTTTTGTTGGGGATCTTTGCCCGGAAGTCACTGATGCTA
EST: gi|6270004|gb|AW157975.1|AW157975
EST:     GATTAAAGTCAATTGGGCATATACAAGTACTCCGAGGGAGGACACATCAG                         GTCATTTTAATATTTTTGTTGGGGATCTTTGCCCGGAAGTCACTGATGCTA
genomic: GATTAAAGTCAATTGGGCATATACAAGTACTCCGAGGGAGGGCACATCAGgtttggaact ... atctatgcagGTCATTTTAATATTTTTGTTGGGGATCTTTGCCCGGAAGTCACTGATGCTA
EST: gi|32927394|gb|CF032206.1|CF032206
EST:     GTACTCCGAGGGAGGGCACATCAG                         GTCATTTTAATATTTTTGTTGGGGATCTTTGCCCGGAAGTCACTGATGCTA
genomic: GTACTCCGAGGGAGGGCACATCAGgtttggaact ... atctatgcagGTCATTTTAATATTTTTGTTGGGGATCTTTGCCCGGAAGTCACTGATGCTA
EST: gi|32928740|gb|CF033552.1|CF033552
EST:     ACTCCGAGGGAGGGCACATCAG                         GTCATTTTAATATTTTTGTTGGGGATCTTTGCCCGGAAGTCACTGATGCTA
genomic: ACTCCGAGGGAGGGCACATCAGgtttggaact ... atctatgcagGTCATTTTAATATTTTTGTTGGGGATCTTTGCCCGGAAGTCACTGATGCTA
EST: gi|33092403|gb|CF052397.1|CF052397
EST:     GTACTCCGAGGGAGGGCACATCAG                         GTCATTTTAATATTTTTGTTGGGGATCTTTGCCCGGAAGTCACTGATGCTA
genomic: GTACTCCGAGGGAGGGCACATCAGgtttggaact ... atctatgcagGTCATTTTAATATTTTTGTTGGGGATCTTTGCCCGGAAGTCACTGATGCTA
EST: gi|32846545|gb|CD986226.1|CD986226
EST:     ACTCCGAGGGAGGGCACATCAG                         GTCATTTTAATATTTTTGTTGGGGATCTTTGCCCGGAAGTCACTGATGCTA
genomic: ACTCCGAGGGAGGGCACATCAGgtttggaact ... atctatgcagGTCATTTTAATATTTTTGTTGGGGATCTTTGCCCGGAAGTCACTGATGCTA
EST: gi|32928010|gb|CF032822.1|CF032822
EST:     TACTCCGAGGGAGGGCACATCAG                         GTCATTTTAATATTTTTGGTGGGGATCTTTGCCCGGAAGTCACTGATGCTA
genomic: TACTCCGAGGGAGGGCACATCAGgtttggaact ... atctatgcagGTCATTTTAATATTTTTGTTGGGGATCTTTGCCCGGAAGTCACTGATGCTA
EST: gi|32850928|gb|CD990609.1|CD990609
EST:     GATTAAAGTCAATTGGGCATATACAAGTACTCCGAGGGAGGGCACATCAG                         GTCATTTTAATATTTTTGTTGGGGATCTTTGCCCGGAAGTCACTGATGCTA
genomic: GATTAAAGTCAATTGGGCATATACAAGTACTCCGAGGGAGGGCACATCAGgtttggaact ... atctatgcagGTCATTTTAATATTTTTGTTGGGGATCTTTGCCCGGAAGTCACTGATGCTA