1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GATACTAGGTACACCGAATGAGCAGAGTTGGCCAGGAGTCAGTTGTTTGCCTGACTTCAAGACAGCTTTCCCCAGGTGGCAAGCTCAGgtaaggcaacagcataagcatttcgctgggcacatgtggcaagtgcattgtgtatcctcatccatagcttacaatctgtgtttgtcatatatatccgatgcctccattacag
species | Zea mays |
transcript | GRMZM2G008327_T01 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TCAGTTGTTTGCCTGACTTCAAGACAGCTTTCCCCAGGTGGCAAGCTCAG GACCTGGCAACAGTAGTCCCAAATCTTGACCCTGCTGGGTTGGACCTTCTCEST: gi|18174097|gb|BM349485.1|BM349485
genomic: TCAGTTGTTTGCCTGACTTCAAGACAGCTTTCCCCAGGTGGCAAGCTCAGgtaaggcaac ... tccattacagGACCTGGCAACAGTAGTCCCAAATCTTGACCCTGCTGGGTTGGACCTTCTC
EST: TCAGTTGTTTGCCTGACTTCAAGACAGCTTTCCCCAGGTGGCAAGCTCAG GACCTGGCAACAGTAGTCCCAAATCTTGACCCTGCTGGGTTGGACCTTCTCEST: gi|60394106|gb|DN226976.1|DN226976
genomic: TCAGTTGTTTGCCTGACTTCAAGACAGCTTTCCCCAGGTGGCAAGCTCAGgtaaggcaac ... tccattacagGACCTGGCAACAGTAGTCCCAAATCTTGACCCTGCTGGGTTGGACCTTCTC
EST: TCAGTTGTTTGCCTGACTTCAAGACAGCTTTCCCCAGGTGGCAAGCTCAG GACCTGGCAACAGTAGTCCCAAATCTTGACCCTGCTGGGTTGGACCTTCTCEST: gi|4609857|gb|AI600696.1|AI600696
genomic: TCAGTTGTTTGCCTGACTTCAAGACAGCTTTCCCCAGGTGGCAAGCTCAGgtaaggcaac ... tccattacagGACCTGGCAACAGTAGTCCCAAATCTTGACCCTGCTGGGTTGGACCTTCTC
EST: TCAGTTGTTTGCCTGACTTCAAGACAGCTTTCCCCAGGTGGCAAGCTCAG GACCTGGCAACAGTAGTCCCAAATCTTGACCCTGCTGGGTTGGACCTTCTCEST: gi|76017100|gb|DT944270.1|DT944270
genomic: TCAGTTGTTTGCCTGACTTCAAGACAGCTTTCCCCAGGTGGCAAGCTCAGgtaaggcaac ... tccattacagGACCTGGCAACAGTAGTCCCAAATCTTGACCCTGCTGGGTTGGACCTTCTC
EST: TCAGTTGTTTGCCTGACTTCAAGACAGCTTTCCCCAGGTGGCAAGCTCAG GACCTGGCAACAGTAGTCCCAAATCTTGACCCTGCTGGGTTGGACCTTCTCEST: gi|5525740|gb|AI861633.1|AI861633
genomic: TCAGTTGTTTGCCTGACTTCAAGACAGCTTTCCCCAGGTGGCAAGCTCAGgtaaggcaac ... tccattacagGACCTGGCAACAGTAGTCCCAAATCTTGACCCTGCTGGGTTGGACCTTCTC
EST: TCAGTTGTTTGCCTGACTTCAAGACAGCTTTCCCCAGGTGGCAAGCTCAG GACCTGGCAACAGTAGTCCCAAATCTTGACCCTGCTGGGTTGGACCTTCTCEST: gi|211440494|gb|FL452489.1|FL452489
genomic: TCAGTTGTTTGCCTGACTTCAAGACAGCTTTCCCCAGGTGGCAAGCTCAGgtaaggcaac ... tccattacagGACCTGGCAACAGTAGTCCCAAATCTTGACCCTGCTGGGTTGGACCTTCTC
EST: TCAGTTGTTTGCCTGACTTCAAGACAGCTTTCCCCAGGTGGCAAGCTCAG GACCTGGCAACAGTAGTCCCAAATCTTGACCCTGCTGGGTTGGACCTTCTCEST: gi|76017014|gb|DT944184.1|DT944184
genomic: TCAGTTGTTTGCCTGACTTCAAGACAGCTTTCCCCAGGTGGCAAGCTCAGgtaaggcaac ... tccattacagGACCTGGCAACAGTAGTCCCAAATCTTGACCCTGCTGGGTTGGACCTTCTC
EST: TCAGTTGTTTGCCTGACTTCAAGACAGCTTTCCCCAGGTGGCAAGCTCAG GACCTGGCAACAGTAGTCCCAAATCTTGACCCTGCTGGGTTGGACCTTCTCEST: gi|211200718|gb|FL344211.1|FL344211
genomic: TCAGTTGTTTGCCTGACTTCAAGACAGCTTTCCCCAGGTGGCAAGCTCAGgtaaggcaac ... tccattacagGACCTGGCAACAGTAGTCCCAAATCTTGACCCTGCTGGGTTGGACCTTCTC
EST: TCAGTTGTTTGCCTGACTTCAAGACAGCTTTCCCCAGGTGGCAAGCTCAG GACCTGGCAACAGTAGTCCCAAATCTTGACCCEST: gi|84969725|gb|DW468154.1|DW468154
genomic: TCAGTTGTTTGCCTGACTTCAAGACAGCTTTCCCCAGGTGGCAAGCTCAGgtaaggcaac ... tccattacagGACCTGGCAACAGTAGTCCCAAATCTTGACCC
EST: TCAGTTGTTTGCCTGACTTCAAGACAGCTTTCCCCAGGTGGCAAGCTCAG GACCTGGCAACAGTAGTCCCAAATCTTGACCCTGCGGGGTGGGACCTTCTCEST: gi|149096226|gb|EE181929.2|EE181929
genomic: TCAGTTGTTTGCCTGACTTCAAGACAGCTTTCCCCAGGTGGCAAGCTCAGgtaaggcaac ... tccattacagGACCTGGCAACAGTAGTCCCAAATCTTGACCCTGCTGGGTTGGACCTTCTC
EST: TCAGTTGTTTGCCTGACTTCAAGACAGCTTTCCCCAGGTGGCAAGCTCAG GACCTGGCAACAGTAGTCCCAAATCTTGACCCTGCTGGGTGGGACCTTCTTEST: gi|18171336|gb|BM341176.1|BM341176
genomic: TCAGTTGTTTGCCTGACTTCAAGACAGCTTTCCCCAGGTGGCAAGCTCAGgtaaggcaac ... tccattacagGACCTGGCAACAGTAGTCCCAAATCTTGACCCTGCTGGGTTGGACCTTCTC
EST: TCAGTTGTTTGCCTGACTTCAAGACAGCTTTCCCCAGGTGGCAAGCTCAG GACCTGGCAACAGTAGTCCCAAATCTTGACCCTGCTGGGTTGGACCTTCTCEST: gi|50327703|gb|CO522829.1|CO522829
genomic: TCAGTTGTTTGCCTGACTTCAAGACAGCTTTCCCCAGGTGGCAAGCTCAGgtaaggcaac ... tccattacagGACCTGGCAACAGTAGTCCCAAATCTTGACCCTGCTGGGTTGGACCTTCTC
EST: TCAGTTGTTTGCCTGACTTCAAGACAGCTTTCCCCAGGTGGCAAGCTCAG GACCTGGCAACAGTAGTCCCAAATCTTGACCCTGCTGGGTTGGCCCTTCTCEST: gi|18166325|gb|BM336164.1|BM336164
genomic: TCAGTTGTTTGCCTGACTTCAAGACAGCTTTCCCCAGGTGGCAAGCTCAGgtaaggcaac ... tccattacagGACCTGGCAACAGTAGTCCCAAATCTTGACCCTGCTGGGTTGGACCTTCTC
EST: TCAGTTGTTTGCCTGACTTCAAGACAGCTTTCCCCAGGTGGCAAGCTCAG GACCTGGCAACAGTAGTCCCAAATCTTGACCCTGCTGGGTTGGACCTTCTCEST: gi|60394498|gb|DN227368.1|DN227368
genomic: TCAGTTGTTTGCCTGACTTCAAGACAGCTTTCCCCAGGTGGCAAGCTCAGgtaaggcaac ... tccattacagGACCTGGCAACAGTAGTCCCAAATCTTGACCCTGCTGGGTTGGACCTTCTC
EST: TCAGTTGTTTGCCTGACTTCAAGACAGCTTTCCCCAGGTGGCAAGCTCAG GACCTGGCAACAGTAGTCCCAAATCTTGACCCTGCTGGGTTGGACCTTCTCEST: gi|31362736|gb|CD447093.1|CD447093
genomic: TCAGTTGTTTGCCTGACTTCAAGACAGCTTTCCCCAGGTGGCAAGCTCAGgtaaggcaac ... tccattacagGACCTGGCAACAGTAGTCCCAAATCTTGACCCTGCTGGGTTGGACCTTCTC
EST: TCAGTTGTTTGCCTGACTTCAAGACAGCTTTCCCCAGGTGGCAAGCTCAG GACCTGGCAACAEST: gi|60345525|gb|DN212498.1|DN212498
genomic: TCAGTTGTTTGCCTGACTTCAAGACAGCTTTCCCCAGGTGGCAAGCTCAGgtaaggcaac ... tccattacagGACCTGGCAACA
EST: TCAGTTGTTTGCCTGACTTCAAGACAGCTTTCCCCAGGTGGCAAGCTCAG GACCTGGCAACAGTAGTCCCAAATCTTGACCCTGCTGGGTTGGACCTTCTCEST: gi|60346409|gb|DN213382.1|DN213382
genomic: TCAGTTGTTTGCCTGACTTCAAGACAGCTTTCCCCAGGTGGCAAGCTCAGgtaaggcaac ... tccattacagGACCTGGCAACAGTAGTCCCAAATCTTGACCCTGCTGGGTTGGACCTTCTC
EST: TCAGTTGTTTGCCTGACTTCAAGACAGCTTTCCCCAGGTGGCAAGCTCAG GACCTGGCAACAGTAGTCCCAAATCTTGACCCTGCTGGGTTGGACCTTCTCEST: gi|86470531|gb|DY236901.1|DY236901
genomic: TCAGTTGTTTGCCTGACTTCAAGACAGCTTTCCCCAGGTGGCAAGCTCAGgtaaggcaac ... tccattacagGACCTGGCAACAGTAGTCCCAAATCTTGACCCTGCTGGGTTGGACCTTCTC
EST: TCAGTTGTTTGCCTGACTTCAAGACAGCTTTCCCCAGGTGGCAAGCTCAG GACCTGGCAACAGTAGTCCCAAATCTTGACCCTGCTGGGTTGGACCTTCTCEST: gi|148933262|gb|EC876914.2|EC876914
genomic: TCAGTTGTTTGCCTGACTTCAAGACAGCTTTCCCCAGGTGGCAAGCTCAGgtaaggcaac ... tccattacagGACCTGGCAACAGTAGTCCCAAATCTTGACCCTGCTGGGTTGGACCTTCTC
EST: TCAGTTGTTTGCCTGACTTCAAGACAGCTTTCCCCAGGTGGCAAGCTCAG GACCTGGCAACAGTAGTCCCAAATCTTGACCCTGCTGGGTGGGACCTTCTTEST: gi|211484592|gb|FL266361.1|FL266361
genomic: TCAGTTGTTTGCCTGACTTCAAGACAGCTTTCCCCAGGTGGCAAGCTCAGgtaaggcaac ... tccattacagGACCTGGCAACAGTAGTCCCAAATCTTGACCCTGCTGGGTTGGACCTTCTC
EST: TCAGTTGTTTGCCTGACTTCAARACAGCTTTCCCCAGGTGGCAAGCTCAG GACCTGGCAACAGTAGTCCCAAATCTTGACCCTGCTGGGTTGGACCTTCTCEST: gi|60397309|gb|DN230125.1|DN230125
genomic: TCAGTTGTTTGCCTGACTTCAAGACAGCTTTCCCCAGGTGGCAAGCTCAGgtaaggcaac ... tccattacagGACCTGGCAACAGTAGTCCCAAATCTTGACCCTGCTGGGTTGGACCTTCTC
EST: TCAGTTGTTTGCCTGACTTCAAGACAGCTTTCCCCAGGTGGCAAGCTCAG GACCTGGCAACAGTAGTCCCAAATCTTGACCCTGCTGGGTTGGACCTTCTCEST: gi|4966783|gb|AI691639.1|AI691639
genomic: TCAGTTGTTTGCCTGACTTCAAGACAGCTTTCCCCAGGTGGCAAGCTCAGgtaaggcaac ... tccattacagGACCTGGCAACAGTAGTCCCAAATCTTGACCCTGCTGGGTTGGACCTTCTC
EST: TCAGTTGTTTGCCTGACTTCAAGGCAGCTTTCCCCAGGTGGCAAGCTCAG GACCTGGCAACAGTAGTCCCAAATCTTGACCCTGCTGGGTTGGACCTTCTCEST: gi|50337361|gb|CO532487.1|CO532487
genomic: TCAGTTGTTTGCCTGACTTCAAGACAGCTTTCCCCAGGTGGCAAGCTCAGgtaaggcaac ... tccattacagGACCTGGCAACAGTAGTCCCAAATCTTGACCCTGCTGGGTTGGACCTTCTC
EST: TCAGTTGTTTGCCTGACTTCAAGACAGCTTTCCCCAGGTGGCAAGCTCAG GACCTGGCAACAGTAGTCCCAAATCTTGACCCTGCTGGGTTGGACCTTCTCEST: gi|71768728|gb|DR966665.1|DR966665
genomic: TCAGTTGTTTGCCTGACTTCAAGACAGCTTTCCCCAGGTGGCAAGCTCAGgtaaggcaac ... tccattacagGACCTGGCAACAGTAGTCCCAAATCTTGACCCTGCTGGGTTGGACCTTCTC
EST: TCAGTTGTTTGCCTGACTTCAAGACAGCTTTCCCCAGGTGGCAAGCTCAG GACCTGGCAACAGTAGTCCCAAATCTTGACCCTGCTGGGTTGGACCTTCTCEST: gi|60352073|gb|DN219046.1|DN219046
genomic: TCAGTTGTTTGCCTGACTTCAAGACAGCTTTCCCCAGGTGGCAAGCTCAGgtaaggcaac ... tccattacagGACCTGGCAACAGTAGTCCCAAATCTTGACCCTGCTGGGTTGGACCTTCTC
EST: TCAGTTGTTTGCCTGACTTCAAGACAGCTTTCCCCAGGTGGCAAGCTCAG GACCTGGCAACAGTAGTCCCAAATCTTGACCCTGCTGGGTTGGACCTTCTCEST: gi|50323180|gb|CO518306.1|CO518306
genomic: TCAGTTGTTTGCCTGACTTCAAGACAGCTTTCCCCAGGTGGCAAGCTCAGgtaaggcaac ... tccattacagGACCTGGCAACAGTAGTCCCAAATCTTGACCCTGCTGGGTTGGACCTTCTC
EST: TCAGTTGTTTGCCTGACTTCAAGACAGCTTTCCCCAGGTGGCAAGCTCAG GACCTGGCAACAGTAGTCCCAAATCTTGACCCTGCTGGGTTGGCCCTTCTCEST: gi|5739730|gb|AI947306.1|AI947306
genomic: TCAGTTGTTTGCCTGACTTCAAGACAGCTTTCCCCAGGTGGCAAGCTCAGgtaaggcaac ... tccattacagGACCTGGCAACAGTAGTCCCAAATCTTGACCCTGCTGGGTTGGACCTTCTC
EST: TCAGTTGTTTGCCTGACTTCAAGACAGCTTTCCCCAGGTGGCAAGCTCAG GACCTGGCAACAGTAGTCCCAAATCTTGACCCTGCTGGGTTGGACCTTCTCEST: gi|7216216|gb|AW562338.1|AW562338
genomic: TCAGTTGTTTGCCTGACTTCAAGACAGCTTTCCCCAGGTGGCAAGCTCAGgtaaggcaac ... tccattacagGACCTGGCAACAGTAGTCCCAAATCTTGACCCTGCTGGGTTGGACCTTCTC
EST: TTCAAGACAGCTTTCCCCAGGTGGCAAGCTCAG GACCTGGCAACAGTAGTCCCAAATCTTGACCCTGCTGGGTTGGACCTTCTCEST: gi|61118625|gb|DN559586.1|DN559586
genomic: TTCAAGACAGCTTTCCCCAGGTGGCAAGCTCAGgtaaggcaac ... tccattacagGACCTGGCAACAGTAGTCCCAAATCTTGACCCTGCTGGGTTGGACCTTCTC
EST: TCAGTTGTTTGCCTGACTTCAAGACAGCTTTCCCCAGGTGGCAAGCTCAG GACCTGGCAACAGTAGTCCCAAATCTTGACCCTGCTGGGTTGGACCTTCTCEST: gi|17930906|gb|BM267866.1|BM267866
genomic: TCAGTTGTTTGCCTGACTTCAAGACAGCTTTCCCCAGGTGGCAAGCTCAGgtaaggcaac ... tccattacagGACCTGGCAACAGTAGTCCCAAATCTTGACCCTGCTGGGTTGGACCTTCTC
EST: TCAGTTGTTTGCCTGACTTCAAGACAGCTTTCCCCAGGTGGCAAGCTCAG GACCTGGCAACAGTAGTCCCAAATCTTGACCCTGCTGGGTTGGACCTTCTCEST: gi|17930325|gb|BM267285.1|BM267285
genomic: TCAGTTGTTTGCCTGACTTCAAGACAGCTTTCCCCAGGTGGCAAGCTCAGgtaaggcaac ... tccattacagGACCTGGCAACAGTAGTCCCAAATCTTGACCCTGCTGGGTTGGACCTTCTC
EST: TCAGTTGTTTGCCTGACTTCAAGACAGCTTTCCCCAGGTGGCAAGCTCAG GACCTGGCAACAGTAGTCCCAAATCTTGACCCTGCTGGGTTGGACCTTCTCEST: gi|6526696|gb|AW215985.1|AW215985
genomic: TCAGTTGTTTGCCTGACTTCAAGACAGCTTTCCCCAGGTGGCAAGCTCAGgtaaggcaac ... tccattacagGACCTGGCAACAGTAGTCCCAAATCTTGACCCTGCTGGGTTGGACCTTCTC
EST: TCAGTTGTTTGCCTGACTTCAAGACAGCTTTCCCCAGGTGGCAAGCTCAG GACCTGGCAACAGTAGTCCCAAATCTTGACCCTGCTGGGTTGGACCTTCTCEST: gi|7204594|gb|AW559177.1|AW559177
genomic: TCAGTTGTTTGCCTGACTTCAAGACAGCTTTCCCCAGGTGGCAAGCTCAGgtaaggcaac ... tccattacagGACCTGGCAACAGTAGTCCCAAATCTTGACCCTGCTGGGTTGGACCTTCTC
EST: TCAGTTGTTTGCCTGACTTCAAGACAGCTTTCCCCAGGTGGCAAGCTCAG GACCTGGCAACAGTAGTCCCAAATCTTGACCCTGCTGGGTTGGACCTTCTCEST: gi|83278334|gb|DV942342.1|DV942342
genomic: TCAGTTGTTTGCCTGACTTCAAGACAGCTTTCCCCAGGTGGCAAGCTCAGgtaaggcaac ... tccattacagGACCTGGCAACAGTAGTCCCAAATCTTGACCCTGCTGGGTTGGACCTTCTC
EST: TCAGTTGTTTGCCTGACTTCAAGACAGCTTTCCCCAGGTGGCAAGCTCAG GACCTGGCAACAGTAGTCCCAAATCTTGACCCTGCTGGGTTGGACCTTCTCEST: gi|18163033|gb|BM332872.1|BM332872
genomic: TCAGTTGTTTGCCTGACTTCAAGACAGCTTTCCCCAGGTGGCAAGCTCAGgtaaggcaac ... tccattacagGACCTGGCAACAGTAGTCCCAAATCTTGACCCTGCTGGGTTGGACCTTCTC
EST: TCAGTTGTTTGCCTGACTTCAAGACAGCTTTCCCCAGGTGGCAAGCTCAG GACCTGGCAACAGTAGTCCCAAATCTTGACCCTGCTGGGTTGGACCTTCTC
genomic: TCAGTTGTTTGCCTGACTTCAAGACAGCTTTCCCCAGGTGGCAAGCTCAGgtaaggcaac ... tccattacagGACCTGGCAACAGTAGTCCCAAATCTTGACCCTGCTGGGTTGGACCTTCTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATACTAGGTACACCGAATGAGCAGAGTTGGCCAGGAGTCAGTTGTTTGCCTGACTTCAAGACAGCTTTCCCCAGGTGGCAAGCTCAGgtaaggcaacagcataagcatttcgctgggcacatgtggcaagtgcattgtgtatcctcatccatagcttacaatctgtgtttgtcatatatatccgatgcctccattacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA