1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GTCTGCTTTGCGCTGTTTCAAGCGTCGTGTTGCCTATGCTAATGTAACATATGATCgtatccaactgatgctacacattttctattttctgcatcattttatgaattgattatcaagggtatccgtttacatgtgcccttaacttatcgaaatag
species | Zea mays |
transcript | GRMZM2G008242_T01 |
intron # | 6 |
splice site | 5' |
intron type | U12 (go to U12 genes for details) |
EST: TTTGCGCTGTTTCAAGCGTCGTGTTGCCTATGCTAATGTAACATATGATC AEST: gi|40335909|gb|CK369979.1|CK369979
genomic: TTTGCGCTGTTTCAAGCGTCGTGTTGCCTATGCTAATGTAACATATGATCgtatccaact ... atcgaaatag-
EST: TTTGCGCTGTTTCAAGCGTCGTGTTGCCTATGCTAATGTAACATATGATC AEST: gi|40335909|gb|CK369979.1|CK369979
genomic: TTTGCGCTGTTTCAAGCGTCGTGTTGCCTATGCTAATGTAACATATGATCgtatccaact ... atcgaaatag-
EST: TTTGCGCTGTTTCAAGCGTCGTGTTGCCTATGCTAATGTAACATATGATC AEST: gi|37419005|gb|CF647176.1|CF647176
genomic: TTTGCGCTGTTTCAAGCGTCGTGTTGCCTATGCTAATGTAACATATGATCgtatccaact ... atcgaaatag-
EST: TTTGCGCTGTTTCAAGCGTCGTGTTGCCTATGCTAATGTAACATATGATC ATATAGTTGGTTGGAGAACATCATCGCTTCGACGTCAACATGAATTACCAAEST: gi|71433734|gb|DR814784.1|DR814784
genomic: TTTGCGCTGTTTCAAGCGTCGTGTTGCCTATGCTAATGTAACATATGATCgtatccaact ... atcgaaatagATATAGTTGGTTGGAGAACATCATCGCTTCGACGTCAACATGAATTACCAA
EST: AATGTAACATATGATC ATATAGTTGGTTGGAGAACATCATCGCTTCGACGTCAACATGAATTACCAAEST: gi|78022444|gb|DV490831.1|DV490831
genomic: AATGTAACATATGATCgtatccaact ... atcgaaatagATATAGTTGGTTGGAGAACATCATCGCTTCGACGTCAACATGAATTACCAA
EST: TTTGCGCTGTTTCAAGCGTCGTGTTGCCTATGCTAATGTAACATATGATC ATATAGTTGGTTGGAGAACATCATCGCTTCGACGTCAACATGAATTACCAAEST: gi|12968783|gb|BG265820.1|BG265820
genomic: TTTGCGCTGTTTCAAGCGTCGTGTTGCCTATGCTAATGTAACATATGATCgtatccaact ... atcgaaatagATATAGTTGGTTGGAGAACATCATCGCTTCGACGTCAACATGAATTACCAA
EST: TTTGCGCTGTTTCAAGCGTCGTGTTGCCTATGCTAATGTAACATATGATC ATATAGTTGGTTGGAGAACATCATCGCTTCGACGTCAACATGAATTACCAAEST: gi|6194474|gb|AW146578.1|AW146578
genomic: TTTGCGCTGTTTCAAGCGTCGTGTTGCCTATGCTAATGTAACATATGATCgtatccaact ... atcgaaatagATATAGTTGGTTGGAGAACATCATCGCTTCGACGTCAACATGAATTACCAA
EST: TTTGCGCTGNTTCAAGCGTCGTGTTGCCTATGCTAATGTAACATATGATC ATATAGTTGGTTGGAGAACATCATCGCTTCGACGTCAACATGAATTACCAAEST: gi|37387733|gb|CF631065.1|CF631065
genomic: TTTGCGCTGTTTCAAGCGTCGTGTTGCCTATGCTAATGTAACATATGATCgtatccaact ... atcgaaatagATATAGTTGGTTGGAGAACATCATCGCTTCGACGTCAACATGAATTACCAA
EST: TGTAACATATGATC AEST: gi|37387733|gb|CF631065.1|CF631065
genomic: TGTAACATATGATCgtatccaact ... atcgaaatag-
EST: TGTAACATATGATC AEST: gi|37387733|gb|CF631065.1|CF631065
genomic: TGTAACATATGATCgtatccaact ... atcgaaatag-
EST: TGTAACATATGATC A
genomic: TGTAACATATGATCgtatccaact ... atcgaaatag-
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCTGCTTTGCGCTGTTTCAAGCGTCGTGTTGCCTATGCTAATGTAACATATGATCgtatccaactgatgctacacattttctattttctgcatcattttatgaattgattatcaagggtatccgtttacatgtgcccttaacttatcgaaatag
- - - - - GCTGTT