1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
AGAGAATTTGGATAACAGTGGCAAGAAAAGTGCCCTGTTAGAGTCGTATGAGCCTGAGGAAGCAATAATGATGATTAAAGAGGCTCTTTCCAGTAATGAGgtgtgccattcacatttcagattactgtgttactcagattaccctaatgctcattctttctgacaactaaatcacattggcag
species | Zea mays |
transcript | GRMZM2G007157_T02 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: AGCCTGAGGAAGCAATAAAGATGATTAAAGAGGCTCTTTCCAGTAATGAG ATCATTGCTGATGGCATGCATATTCCGGTGCCCCTTANTTTGGATATATTGEST: gi|71441738|gb|DR822788.1|DR822788
genomic: AGCCTGAGGAAGCAATAATGATGATTAAAGAGGCTCTTTCCAGTAATGAGgtgtgccatt ... acattggcagATCATTGCTGATGGCATGCATATTCCGGTGCCCCTTAATTTGGATATATTG
EST: AGCCTGAGGAAGCAATAATGATGATTAAAGAGGCTCTTTCCAGTAATGAG ATCATTGCTGATGGCATGCATATTCCGGTGCCCCTTAATTTGGATATATTGEST: gi|8366953|gb|BE049862.1|BE049862
genomic: AGCCTGAGGAAGCAATAATGATGATTAAAGAGGCTCTTTCCAGTAATGAGgtgtgccatt ... acattggcagATCATTGCTGATGGCATGCATATTCCGGTGCCCCTTAATTTGGATATATTG
EST: AGCCTGAGGAAGCAATAAAGATGATTAAAGAGGCTCTTTCCAGTAATGAG ATCATTGCTGATGGCATGCATATTCCGGTGCCCCTTAATTTGGATATATTG
genomic: AGCCTGAGGAAGCAATAATGATGATTAAAGAGGCTCTTTCCAGTAATGAGgtgtgccatt ... acattggcagATCATTGCTGATGGCATGCATATTCCGGTGCCCCTTAATTTGGATATATTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGAGAATTTGGATAACAGTGGCAAGAAAAGTGCCCTGTTAGAGTCGTATGAGCCTGAGGAAGCAATAATGATGATTAAAGAGGCTCTTTCCAGTAATGAGgtgtgccattcacatttcagattactgtgttactcagattaccctaatgctcattctttctgacaactaaatcacattggcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG