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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACCTTACTAGCGAGCCGAGGTATCTTGTTACATTTACTGTTGGTATTGGGCAAAAGGCAAATATTGATGCAGCAGTCAAAAAGgtaactggcagactgccatcttacctgcttaaccttggtgcaccaaacttctgagctttgggactgatgtacactagatctgcatcgtgattaaacttgtagtcactttatttgaaatgagcatgcagtcctaccaatttcatgtatgtttcttttatag

Basic information

species Zea mays
transcript GRMZM2G006507_T03
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G006507_T02 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os02g19510.3 (Oryza sativa), 5'ss of exon 5
GACCTTACTAGCGAGCCGAGGTATCTTGTTACATTTACTGTTGGTATTGGGCAAAAGGCAAATATTGATGCAGCAGTCAAAAAGgtaactggcagactgccatcttac-ctgcttaaccttggtgcaccaaacttctgagctttgggactgatgtacactagatct-gcatcgtgattaaacttgtagtcactttat-ttgaaatgagcatgcagtc----ctaccaatttcatgtatgtttcttttatag
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GACCTGAGTAGCGAACCACGGTACCTTGTTACTTTTACAGTTGGAATTACACAGAAGGCTAATATTGATGCTGCTGTCAAAAAGgtaactg--agacggacatcttgcattgcttaaatttggtgcatcaatcaactataccctgtaacagataaacagttaatcttgcattccggt-gaactggtagtcactttttcttaatgtaaatatgcaattattgcttctgaattcatagaagcttttcatatag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|87153082|gb|DY397871.1|DY397871
EST:     TTACTGTTGGTATTGGGCAAAAGGCAAATATTGATGCAGCAGTCAAAAAG                         TTTTCAGACAAATTCACTATTATGCTGTTCCATTATGATGGTCGGACTACT
genomic: TTACTGTTGGTATTGGGCAAAAGGCAAATATTGATGCAGCAGTCAAAAAGgtaactggca ... tcttttatagTTTTCAGACAAATTCACTATTATGCTGTTCCATTATGATGGTCGGACTACT