Sequence
atgc intronic sequence ATGC exonic sequenceTTGTGATCCTCATGCGAGCAAATTTGTAATAAACTCTGATTCTCCTCAGGAAGTTGAAGTTGGCAAGGAAATCATATTCACATATGATGTTCGCTTTGAGgtacaagactgggattaagaattgcttattttaactttgtttagctgctagtgtactctttgaatgtttcttttgtcatgattttaatggaacttccactaattttcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G006117_T03 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os09g38530.1 (Oryza sativa), 5'ss of exon 6
TTGTGATCCTCATGCGAGCAAATTTGTAATAAACTCTGATTCTCCTCAGGAAGTTGAAGTTGGCAAGGAAATCATATTCACATATGATGTTCGCTTTGAGgtacaagactgggat-taagaattg---cttattttaactttgtttagctgctagtgtactctttgaatgtt---tcttttgtcatgattttaatggaac--ttccactaattttcag
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ATGTGACCCTCATGCTAACAAGCTTGTAACAAGTTCTGACTCTCCTCAGGAGGTCGAAGCTGGCAAAGAAATCATATTCACCTATGATGTTCACTTTGAGgtactagttttgcatgttttgtttggattctgtttcccccttcatgtgatagttgcctattctcttaatgttaaatttattgcaatgatttccattgaatctttttccctcattgcag
upper sequence: GRMZM2G006117_T03 (Zea mays), 5'ss of exon 2
lower sequence: Vv11s0037g00210.t01 (Vitis vinifera), 5'ss of exon 6
TTGTGATCCTCATGCGAGCAAATTTGTAATAAACTCTGATTCTCCTCAGGAAGTTGAAGTTGGCAAGGAAATCATATTCACATATGATGTTCGCTTTGAGgtacaagactgggattaagaattgcttattttaactttgtttagctgctagtgtactctttg-aatgtttcttttgtcatgattttaatggaacttccactaattttcag
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ATGTGATCCCCATGCAAAACGTGCCGTTACCAACTCTGATTCTCCTCAAGAGGTTGAAGATAAGAAGGAAATTATATTCACATACGATGTTGAGTTCCAAgtaagaccacatactttataataaataatgattttgccattaacctgt--gtgtactacaggcaatgatattcctgt-attgctgtcatgtgcttggtatgcag------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|32929714|gb|CF034526.1|CF034526EST: AAGTTGAAGTTGGCAAGGAAATCATATTCACATATGATGTTCGCTTTGAG GAGAGTGAGATCAAGTGGGCGTCACGCT
genomic: AAGTTGAAGTTGGCAAGGAAATCATATTCACATATGATGTTCGCTTTGAGgtacaagact ... taattttcagGAGAGTGAGATCAAGTGGGCGTCACGCT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTGTGATCCTCATGCGAGCAAATTTGTAATAAACTCTGATTCTCCTCAGGAAGTTGAAGTTGGCAAGGAAATCATATTCACATATGATGTTCGCTTTGAGgtacaagactgggattaagaattgcttattttaactttgtttagctgctagtgtactctttgaatgtttcttttgtcatgattttaatggaacttccactaattttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA