1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
AGTGGACCTTGATTTTGAGCACAATGTAAGACCTGCCCCTGTAATAACCGAGGAAGTGACAGCTTCCCTTGAAGAAATGATAAAGAAAAGAATCGCAGAGgtacatgcttggtttttccccttttttttgctcatgtgaatggtgttcaacttcagcttggtagtgtagtgcatttgttgcaatcaatgtctgatgatca...
species | Zea mays |
transcript | GRMZM2G005308_T02 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: AGGAAGTGACAGCTTCCCTTGAAGAAATGATAAAGAAAAGAATCGCAGAG AGTCATTTTGATGATGTTGAGAAGCCGTCTCTCTTGCCATCTAAAGCTCCAEST: gi|31363813|gb|CD448168.1|CD448168
genomic: AGGAAGTGACAGCTTCCCTTGAAGAAATGATAAAGAAAAGAATCGCAGAGgtacatgctt ... ttcattacagAGTCATTTTGATGATGTTGAGAAGCCGTCTCTCTTGCCATCTAAAGCTCCA
EST: AGGAAGTGACAGCTTCCCTTGAAGAAATGATAAAGAAAAGAATCGCAGAG AGTCATTTTGATGATGTTGAGAAGCCGTCTCTCTTGCCATCTAAAGCTCCAEST: gi|60394413|gb|DN227283.1|DN227283
genomic: AGGAAGTGACAGCTTCCCTTGAAGAAATGATAAAGAAAAGAATCGCAGAGgtacatgctt ... ttcattacagAGTCATTTTGATGATGTTGAGAAGCCGTCTCTCTTGCCATCTAAAGCTCCA
EST: AGGAAGTGACAGCTTCCCTTGAAGAAATGATAAAGAAAAGAATCGCAGAG AGTCATTTTGATGATGTTGAGAAGCCGTCTCTCTTGCCATCTAAAGCTCCAEST: gi|71764578|gb|DR962515.1|DR962515
genomic: AGGAAGTGACAGCTTCCCTTGAAGAAATGATAAAGAAAAGAATCGCAGAGgtacatgctt ... ttcattacagAGTCATTTTGATGATGTTGAGAAGCCGTCTCTCTTGCCATCTAAAGCTCCA
EST: AGGAAGTGACAGCTTCCCTTGAAGAAATGATAAAGAAAAGAATCGCAGAG AGTCATTTTGATGATGTTGAGAAGCCGTCTCTCTTGCCATCTAAAGCTCCAEST: gi|31351205|gb|CD435562.1|CD435562
genomic: AGGAAGTGACAGCTTCCCTTGAAGAAATGATAAAGAAAAGAATCGCAGAGgtacatgctt ... ttcattacagAGTCATTTTGATGATGTTGAGAAGCCGTCTCTCTTGCCATCTAAAGCTCCA
EST: AGGAAGTGACAGCTTCCCTTGAAGAAATGATAAAGAAAAGAATCGCAGAG AGTCATTTTGATGATGTTGAGAAGCCGTCTCTCTTGCCATCTAAAGCTCCAEST: gi|71761969|gb|DR959906.1|DR959906
genomic: AGGAAGTGACAGCTTCCCTTGAAGAAATGATAAAGAAAAGAATCGCAGAGgtacatgctt ... ttcattacagAGTCATTTTGATGATGTTGAGAAGCCGTCTCTCTTGCCATCTAAAGCTCCA
EST: AGGAAGTGACAGCTTCCCTTGAAGAAATGATAAAGAAAAGAATCGCAGAG AGTCATTTTGATGATGTTGAGAAGCCGTCTCTCTTGCCATCTAAAGCTCCAEST: gi|211183291|gb|FL434311.1|FL434311
genomic: AGGAAGTGACAGCTTCCCTTGAAGAAATGATAAAGAAAAGAATCGCAGAGgtacatgctt ... ttcattacagAGTCATTTTGATGATGTTGAGAAGCCGTCTCTCTTGCCATCTAAAGCTCCA
EST: ATGATAAAGAAAAGAATCGCAGAG AGTCATTTTGATGATGTTGAGAAGCCGTCTCTCTTGCCATCTAAAGCTCCAEST: gi|31364214|gb|CD448569.1|CD448569
genomic: ATGATAAAGAAAAGAATCGCAGAGgtacatgctt ... ttcattacagAGTCATTTTGATGATGTTGAGAAGCCGTCTCTCTTGCCATCTAAAGCTCCA
EST: GAAGAAATGATAAAGAAAAGAATCGCAGAG AGTCATTTTGATGATGTTGAGAAGCCGTCTCTCTTGCCATCTAAAGCTCCAEST: gi|76011806|gb|DT938976.1|DT938976
genomic: GAAGAAATGATAAAGAAAAGAATCGCAGAGgtacatgctt ... ttcattacagAGTCATTTTGATGATGTTGAGAAGCCGTCTCTCTTGCCATCTAAAGCTCCA
EST: AGGAAGTGACAGCTTCCCTTGAAGAAATGATAAAGAAAAGAATCGCAGAG AGTCATTTTGATGATGTTGAGAAGCCGTCTCTCTTGCCATCTAAAGCTCCAEST: gi|40303495|gb|CK347882.1|CK347882
genomic: AGGAAGTGACAGCTTCCCTTGAAGAAATGATAAAGAAAAGAATCGCAGAGgtacatgctt ... ttcattacagAGTCATTTTGATGATGTTGAGAAGCCGTCTCTCTTGCCATCTAAAGCTCCA
EST: AGGAAGTGACAGCTTCCCTTGAAGAAATGATAAAGAAAAGAATCGCAGAG AGTCATTTTGATGATGTTGAGAAGCCGTCTCTCTTGCCATCTAAAGCTCCA
genomic: AGGAAGTGACAGCTTCCCTTGAAGAAATGATAAAGAAAAGAATCGCAGAGgtacatgctt ... ttcattacagAGTCATTTTGATGATGTTGAGAAGCCGTCTCTCTTGCCATCTAAAGCTCCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGTGGACCTTGATTTTGAGCACAATGTAAGACCTGCCCCTGTAATAACCGAGGAAGTGACAGCTTCCCTTGAAGAAATGATAAAGAAAAGAATCGCAGAGgtacatgcttggtttttccccttttttttgctcatgtgaatggtgttcaacttcagcttggtagtgtagtgcatttgttgcaatcaatgtctgatgatca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA