1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
AAACCTTAATCATAACCAGCTATCAGGAGATATCACGGACATATTTTCCAACCTCCCAAGTTTAACCACAGTgtgagtgtttcctctttcatttttttcgcttcttggtggcatgcccatcatatgcttcatctgatttttttggtgaaaaattatttcag
species | Zea mays |
transcript | GRMZM2G004572_T01 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TCAGGAGATATCACGGACATATTTTCCAACCTCCCAAGTTTAACCACAGT AGACCTTTCCTCCCATTCTCTTACTGGCAATCTACCACAAAGTTTCACTTCEST: gi|74245639|gb|DT653553.1|DT653553
genomic: TCAGGAGATATCACGGACATATTTTCCAACCTCCCAAGTTTAACCACAGTgtgagtgttt ... attatttcagAGACCTTTCCTCCAATTCTCTTACTGGCAATCTACCACAAAGTTTCACTTC
EST: TCAGGAGATATCACGGACATATTTTCCAACCTCCCAAGTTTAACCACAGT AGACCTTTCCTCCAATTCTCTTACTGGCAATCTACCACAAAGTTTCACTTCEST: gi|78116943|gb|DV535330.1|DV535330
genomic: TCAGGAGATATCACGGACATATTTTCCAACCTCCCAAGTTTAACCACAGTgtgagtgttt ... attatttcagAGACCTTTCCTCCAATTCTCTTACTGGCAATCTACCACAAAGTTTCACTTC
EST: TCAGGAGATATCACGGACATATTTTCCAACCTCCCAAGTTTAACCACAGT AGACCTTTCCTCCAATTCTCTTACTGGCAATCTACCACAAAGTTTCACTTCEST: gi|74241625|gb|DT649539.1|DT649539
genomic: TCAGGAGATATCACGGACATATTTTCCAACCTCCCAAGTTTAACCACAGTgtgagtgttt ... attatttcagAGACCTTTCCTCCAATTCTCTTACTGGCAATCTACCACAAAGTTTCACTTC
EST: TCAGGAGATATCACGGACATATTTTCCAACCTCCCAAGTTTAACCACAGT AGACCTTTCCTCCAATTCTCTTACTGGCAATCTACCACAAAGTTTCACTTC
genomic: TCAGGAGATATCACGGACATATTTTCCAACCTCCCAAGTTTAACCACAGTgtgagtgttt ... attatttcagAGACCTTTCCTCCAATTCTCTTACTGGCAATCTACCACAAAGTTTCACTTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAACCTTAATCATAACCAGCTATCAGGAGATATCACGGACATATTTTCCAACCTCCCAAGTTTAACCACAGTgtgagtgtttcctctttcatttttttcgcttcttggtggcatgcccatcatatgcttcatctgatttttttggtgaaaaattatttcag
- - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - GGAGAT