1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TCTTCTGCAAGCAGCAATCGGAGCGTTCTCTACAGTCTTTCCTGACTACCAGGAGAGGATTGCTAGGCATGAAGCTGCTCATTTCCTAGgtatgtgattctcatttcctagcaaaattatatctgcagtagtaatttactaaatggatgttctgttgaaaatccag
species | Zea mays |
transcript | GRMZM2G004352_T01 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TCCTGACTACCAGGAGAGGATTGCTAGGCATGAAGCTGCTCATTTCCTAG TCGCCTATTTGATTGGCCTCCCTATCCTTGGATAEST: gi|148954649|gb|EC900096.2|EC900096
genomic: TCCTGACTACCAGGAGAGGATTGCTAGGCATGAAGCTGCTCATTTCCTAGgtatgtgatt ... gaaaatccagTCGCCTATTTGATTGGCCTCCCTATCCTTGGATA
EST: TCCTGACTACCAGGAGAGGATTGCTAGGCATGAAGCTGCTCATTTCCTAG TCGCCTATTTGATTGGCCTCCCTATCCTTGGATATTCTTTGGACATCGGAAEST: gi|149084909|gb|EE174419.2|EE174419
genomic: TCCTGACTACCAGGAGAGGATTGCTAGGCATGAAGCTGCTCATTTCCTAGgtatgtgatt ... gaaaatccagTCGCCTATTTGATTGGCCTCCCTATCCTTGGATATTCTTTGGACATCGGAA
EST: TCCTGACTACCAGGAGAGGATTGCTAGGCATGAAGCTGCTCATTTCCTAG TCGCCTATTTGATTGGCCTCCCTATCCTTGGATATTCTTTGGACATCGGAAEST: gi|149100297|gb|EE186362.2|EE186362
genomic: TCCTGACTACCAGGAGAGGATTGCTAGGCATGAAGCTGCTCATTTCCTAGgtatgtgatt ... gaaaatccagTCGCCTATTTGATTGGCCTCCCTATCCTTGGATATTCTTTGGACATCGGAA
EST: CAGGAGAGGATTGCTAGGCATGAAGCTGCTCATTTCCTAG TCGCCTATTTGATTGGCCTCCCTATCCTTGGATATTCTTTGGACATCGGAAEST: gi|76010526|gb|DT937696.1|DT937696
genomic: CAGGAGAGGATTGCTAGGCATGAAGCTGCTCATTTCCTAGgtatgtgatt ... gaaaatccagTCGCCTATTTGATTGGCCTCCCTATCCTTGGATATTCTTTGGACATCGGAA
EST: TCCTGACTACCAGGAGAGGATTGCTAGGCATGAAGCTGCTCATTTCCTAG TCGCCTATTTGATTGGCCTCCCTATCCTTGGATATTCTTTGGACATCGGAAEST: gi|71313543|gb|DR793346.1|DR793346
genomic: TCCTGACTACCAGGAGAGGATTGCTAGGCATGAAGCTGCTCATTTCCTAGgtatgtgatt ... gaaaatccagTCGCCTATTTGATTGGCCTCCCTATCCTTGGATATTCTTTGGACATCGGAA
EST: TCCTGACTACCAGGAGAGGATTGCTAGGCATGAAGCTGCTCATTTCCTAG TCGCCTATTTGATTGGCCTCCCTATCCTTGGATATTCTTTGGACATCGGANEST: gi|149100298|gb|EE186363.2|EE186363
genomic: TCCTGACTACCAGGAGAGGATTGCTAGGCATGAAGCTGCTCATTTCCTAGgtatgtgatt ... gaaaatccagTCGCCTATTTGATTGGCCTCCCTATCCTTGGATATTCTTTGGACATCGGAA
EST: TCCTGACTACCAGGAGAGGATTGCTAGGCATGAAGCTGCTCATTTCCTAG TCGCCTATTTGATTGGCCTCCCTATCCTTGGATATTCTTTGGACATCGGAAEST: gi|71317337|gb|DR795362.1|DR795362
genomic: TCCTGACTACCAGGAGAGGATTGCTAGGCATGAAGCTGCTCATTTCCTAGgtatgtgatt ... gaaaatccagTCGCCTATTTGATTGGCCTCCCTATCCTTGGATATTCTTTGGACATCGGAA
EST: GAGGATTGCTAGGCATGAAGCTGCTCATTTCCTAG TCGCCTATTTGATTGGCCTCCCTATCCTTGGATATTCTTTGGACATCGGAAEST: gi|148930743|gb|EC873038.2|EC873038
genomic: GAGGATTGCTAGGCATGAAGCTGCTCATTTCCTAGgtatgtgatt ... gaaaatccagTCGCCTATTTGATTGGCCTCCCTATCCTTGGATATTCTTTGGACATCGGAA
EST: TCCTGACTACCAGGAGAGGATTGCTAGGCATGAAGCTGCTCATTTCCTAG TCGCCTATTTGATTGGCCTCCCTATCCTTGGATATTCTTTGGACATCGGAAEST: gi|71317339|gb|DR795363.1|DR795363
genomic: TCCTGACTACCAGGAGAGGATTGCTAGGCATGAAGCTGCTCATTTCCTAGgtatgtgatt ... gaaaatccagTCGCCTATTTGATTGGCCTCCCTATCCTTGGATATTCTTTGGACATCGGAA
EST: TCCTGACTACCAGGAGAGGATTGCTAGGCATGAAGCTGCTCATTTCCTAG TCGCCTATTTGATTGGCCTCCCTATCCTTGGATATTCTTTGGACATCGGAN
genomic: TCCTGACTACCAGGAGAGGATTGCTAGGCATGAAGCTGCTCATTTCCTAGgtatgtgatt ... gaaaatccagTCGCCTATTTGATTGGCCTCCCTATCCTTGGATATTCTTTGGACATCGGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCTTCTGCAAGCAGCAATCGGAGCGTTCTCTACAGTCTTTCCTGACTACCAGGAGAGGATTGCTAGGCATGAAGCTGCTCATTTCCTAGgtatgtgattctcatttcctagcaaaattatatctgcagtagtaatttactaaatggatgttctgttgaaaatccag
- - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT