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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATGAGTAGTGCTGCTGGAAAGGTTCCTGCTCCTGGTCAGGCCATTTACTCTGCCTCCAAACATGCTCTTAATGGTTACTTTGCTTCTCTGCGATCTGAGgtacccgaaattcacatattagcacacatcctaattgtaatttgtatcagcatgctaagctactcacttatgttatgaaaagtattcctagatggataga...

Basic information

species Zea mays
transcript GRMZM2G003692_T02
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|91875090|gb|EB405047.1|EB405047
EST:     CTGCCTCCAAACATGCTCTTAATGGTTACTTTGCTTCTCTGCGATCTGAG                         TTGTGTACAAAAGGCATTAAGGTCACTGTTATCTGCCCTGGACCGATTGAA
genomic: CTGCCTCCAAACATGCTCTTAATGGTTACTTTGCTTCTCTGCGATCTGAGgtacccgaaa ... tattttgcagTTGTGTACAAAAGGCATTAAGGTCACTGTTATCTGCCCTGGACCGATTGAA
EST: gi|113703640|gb|EE681144.1|EE681144
EST:     CTGCCTCCAAACATGCTCTTAATGGTTACTTTGCTTCTCTGCGATCTGAG                         TTGTGTACAAAAGGCATTAAGGTCACTGTTATCTGCCCTGGACCGATTGAA
genomic: CTGCCTCCAAACATGCTCTTAATGGTTACTTTGCTTCTCTGCGATCTGAGgtacccgaaa ... tattttgcagTTGTGTACAAAAGGCATTAAGGTCACTGTTATCTGCCCTGGACCGATTGAA
EST: gi|6101980|gb|AW126450.1|AW126450
EST:     CTGCCTCCAAACATGCTCTTAATGGTTACTTTGCTTCTCTGCGATCTGAG                         TTGTGTACAAAAGGCATTAAGGTCACTGTTATCTGCCCTGGACCGATTGAA
genomic: CTGCCTCCAAACATGCTCTTAATGGTTACTTTGCTTCTCTGCGATCTGAGgtacccgaaa ... tattttgcagTTGTGTACAAAAGGCATTAAGGTCACTGTTATCTGCCCTGGACCGATTGAA
EST: gi|37390564|gb|CF632514.1|CF632514
EST:     CCAAACATGCTCTTAATGGTTACTTTGCTTCTCTGCGATCTGAG                         TTGTGTACAAAAGGCATTAAGGTCACTGTTATCTGCCCTGGACCGATTGAA
genomic: CCAAACATGCTCTTAATGGTTACTTTGCTTCTCTGCGATCTGAGgtacccgaaa ... tattttgcagTTGTGTACAAAAGGCATTAAGGTCACTGTTATCTGCCCTGGACCGATTGAA
EST: gi|31362808|gb|CD447165.1|CD447165
EST:     CTGCCTCCAAACATGCTCTTAATGGTTACTTTGCTTCTCTGCGATCTGAG                         TTGTGTACAAAAGGCATTAAGGTCACTGTTATCTGCCCTGGACCGATTGAA
genomic: CTGCCTCCAAACATGCTCTTAATGGTTACTTTGCTTCTCTGCGATCTGAGgtacccgaaa ... tattttgcagTTGTGTACAAAAGGCATTAAGGTCACTGTTATCTGCCCTGGACCGATTGAA
EST: gi|6022668|gb|AW067596.1|AW067596
EST:     CTGCCTCCAAACATGCTCTTAATGGTTACTTTGCTTCTCTGCGATCTGAG                         TTGTGTACAAAAGGCATTAAGGTCACTGTTATCTGCCCTGGACCGATTGAA
genomic: CTGCCTCCAAACATGCTCTTAATGGTTACTTTGCTTCTCTGCGATCTGAGgtacccgaaa ... tattttgcagTTGTGTACAAAAGGCATTAAGGTCACTGTTATCTGCCCTGGACCGATTGAA
EST: gi|211078663|gb|FL128724.1|FL128724
EST:     AATGGTTACTTTGCTTCTCTGCGATCTGAG                         TTGTGTACAAAAGGCATTAAGGTCACTGTTATCTGCCCTGGACCGATTGAA
genomic: AATGGTTACTTTGCTTCTCTGCGATCTGAGgtacccgaaa ... tattttgcagTTGTGTACAAAAGGCATTAAGGTCACTGTTATCTGCCCTGGACCGATTGAA
EST: gi|78021266|gb|DV489653.1|DV489653
EST:     CTGCCTCCAAACATGCTCTTAATGGTTACTTTGCTTCTCTGCGATCTGAG                         TTGTGTACAAAAGGCATTAAGGTCACTGTTATCTGCCCTGGACCGATTGAA
genomic: CTGCCTCCAAACATGCTCTTAATGGTTACTTTGCTTCTCTGCGATCTGAGgtacccgaaa ... tattttgcagTTGTGTACAAAAGGCATTAAGGTCACTGTTATCTGCCCTGGACCGATTGAA
EST: gi|71767908|gb|DR965845.1|DR965845
EST:     CTGCCTCCAAACATGCTCTTAATGGTTACTTTGCTTCTCTGCGATCTGAG                         TTGTGTACAAAAGGCATTAAGGTCACTGTTATCTGCCCTGGACCGATTGAA
genomic: CTGCCTCCAAACATGCTCTTAATGGTTACTTTGCTTCTCTGCGATCTGAGgtacccgaaa ... tattttgcagTTGTGTACAAAAGGCATTAAGGTCACTGTTATCTGCCCTGGACCGATTGAA
EST: gi|60353742|gb|DN220715.1|DN220715
EST:     CTGCCTCCAAACATGCTCTTAATGGTTACTTTGCTTCTCTGCGATCTGAG                         TTGTGTACAAAAGGCATTAAGGTCACTGTTATCTGCCCTGGACCGATTGAA
genomic: CTGCCTCCAAACATGCTCTTAATGGTTACTTTGCTTCTCTGCGATCTGAGgtacccgaaa ... tattttgcagTTGTGTACAAAAGGCATTAAGGTCACTGTTATCTGCCCTGGACCGATTGAA