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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAAAGTGTGAAACTCATGGATGGAAAGATGCATATAGGTCAGCTGCAATTTGTTGGAAAGCCAAACCGAGCTCGTGCTTTTGCTGACAGCCATTCGAAAgtgagttctgacatgagaatgcattaatactccaaacaatttctgatccatcacatctacctatgtttgccatttatatcttcag

Basic information

species Zea mays
transcript GRMZM2G002361_T01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G002361_T01 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os01g01130.1 (Oryza sativa), 5'ss of exon 6
TGAAAGTGTGAAACTCATGGATGGAAAGATGCATATAGGTCAGCTGCAATTTGTTGGAAAGCCAAACCGAGCTCGTGCTTTTGCTGACAGCCATTCGAAAgtgagttctgacatgagaatgcattaatactcc--aaacaatttctgatccatcacatctaccta------tgtttgccatttatatcttcag
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TGAAAGAGTGAAACTTGTGGATGGAAAGATGGAGATTAGTGAGCTTCAATTTGTTGGAAAGCCGAATCGTGCTCGTGCTTTTGCTGACAGCCACTCGAAAgtaagtggccacttgagaatgcatttttgctgagaaaatatcatctcattcatgccttgtagccaatggtttgatcgccttttgtatgttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|91056993|gb|EB167411.1|EB167411
EST:     TTGTTGGAAAGCCAAACCGAGCTCGTGCTTTTGCTGACAGCCATTCGAAA                         GTTTTGTTCCAGTATGCGGCAAGGCATGTTCCTCTGAGAATTGAGGATCTG
genomic: TTGTTGGAAAGCCAAACCGAGCTCGTGCTTTTGCTGACAGCCATTCGAAAgtgagttctg ... atatcttcagGTTTTGTTCCAGTATGCGGCAAGGCATGTTCCTCTGAGAATTGAGGATCTG
EST: gi|7145326|gb|AW506807.1|AW506807
EST:     TTGTTGGAAAGCCAAACCGAGCTCGTGCTTTTGCTGACAGCCATTCGAAA                         GTTTTGTTCCAGTATGCGGCAAGGCATGTTCCTCTGAGAATTGAGGATCTG
genomic: TTGTTGGAAAGCCAAACCGAGCTCGTGCTTTTGCTGACAGCCATTCGAAAgtgagttctg ... atatcttcagGTTTTGTTCCAGTATGCGGCAAGGCATGTTCCTCTGAGAATTGAGGATCTG
EST: gi|60393937|gb|DN226807.1|DN226807
EST:     TTGTTGGAAAGCCAAACCGAGCTCGTGCTTTTGCTGACAGCCATTCGAAA                         GTTTTGTTCCAGTATGCGGCAAGGCATGTTCCTCTGAGAATTGAGGATCTG
genomic: TTGTTGGAAAGCCAAACCGAGCTCGTGCTTTTGCTGACAGCCATTCGAAAgtgagttctg ... atatcttcagGTTTTGTTCCAGTATGCGGCAAGGCATGTTCCTCTGAGAATTGAGGATCTG