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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCGTGGAGCGCATCAAGGCGGCGGTCTCCGGCGAGAGTGTTACCCAGCAGTAGCTAGCTTAGTCGAATCAGACACTCTTCTTATCCTTGCATCATTGAAGgtatgattaaaaacccaatcatatgaaggtttacaatttgcaagatttcatcccgttgtttcgtctgatcatcgtcggtcgccgcctttaatttgcag

Basic information

species Zea mays
transcript GRMZM2G001289_T03
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78110127|gb|DV528542.1|DV528542
EST:     TAGCTAGCTTAGTCGAATCAGACACTCTTCTTATCCTTGCATCATTGAAG                         GAGCAGCAAGTTTTAGAGCTTTCATCAGTGGGAAGTCAAGAACGCACCTCA
genomic: TAGCTAGCTTAGTCGAATCAGACACTCTTCTTATCCTTGCATCATTGAAGgtatgattaa ... taatttgcagGAGCAGCAAGTTTTAGAGCTTTCATCAGTGGGAAGTCAAGAACGCACCTCA
EST: gi|76286373|gb|DV025941.1|DV025941
EST:     TAGCTAGCTTAGTCGAATCAGACACTCTTTTTATCCTTGCATCATTGAAG                         GAGCAGCAAGTTTTAGAGCTTTCATCAGTGGGAAGTCAAGAACGCACCTCA
genomic: TAGCTAGCTTAGTCGAATCAGACACTCTTCTTATCCTTGCATCATTGAAGgtatgattaa ... taatttgcagGAGCAGCAAGTTTTAGAGCTTTCATCAGTGGGAAGTCAAGAACGCACCTCA
EST: gi|29945586|gb|CB815715.1|CB815715
EST:     TAGCTAGCTTAGTCGAATCAGACACTCTTCTTATCCTTGCATCATTGAAG                         GAGCAGCAAGTTTTAGAGCTTTCATCAGTGGGAAGTCAAGAACGCACCTCA
genomic: TAGCTAGCTTAGTCGAATCAGACACTCTTCTTATCCTTGCATCATTGAAGgtatgattaa ... taatttgcagGAGCAGCAAGTTTTAGAGCTTTCATCAGTGGGAAGTCAAGAACGCACCTCA
EST: gi|76911360|gb|DV164246.1|DV164246
EST:     TAGCTAGCTTAGTCGAATCAGACACTCTTCTTATCCTTGCATCATTGAAG                         GAGCAGCAAGTTTTAGAGCTTTCATCAGTGGGAAGTCAAGAACGCACCTCA
genomic: TAGCTAGCTTAGTCGAATCAGACACTCTTCTTATCCTTGCATCATTGAAGgtatgattaa ... taatttgcagGAGCAGCAAGTTTTAGAGCTTTCATCAGTGGGAAGTCAAGAACGCACCTCA
EST: gi|33468079|gb|CF245128.1|CF245128
EST:     TAGCTAGCTTAGTCGAATCAGACACTCTTCTTATCCTTGCATCATTGAAG                         GAGCAGCAAGTTTTAGAGCTTTCATCAGTGGGAAGTCAAGAACGCACCTCA
genomic: TAGCTAGCTTAGTCGAATCAGACACTCTTCTTATCCTTGCATCATTGAAGgtatgattaa ... taatttgcagGAGCAGCAAGTTTTAGAGCTTTCATCAGTGGGAAGTCAAGAACGCACCTCA
EST: gi|78092031|gb|DV520405.1|DV520405
EST:     TAGCTAGCTTAGTCGAATCAGACACTCTTCTTATCCTTGCATCATTGAAG                         GAGCAGCAAGTTTTAGAGCTTTCATCAGTGGGAAGTCAAGAACGCACCTCA
genomic: TAGCTAGCTTAGTCGAATCAGACACTCTTCTTATCCTTGCATCATTGAAGgtatgattaa ... taatttgcagGAGCAGCAAGTTTTAGAGCTTTCATCAGTGGGAAGTCAAGAACGCACCTCA
EST: gi|31558851|gb|CD528063.1|CD528063
EST:     TAGCTAGCTTAGTCGAATCAGACACTCTTCTTATCCTTGCATCATTGAAG                         GAGCAGCAAGTTTTAGAGCTTTCATCAGTGGGAAGTCAAGAACGCACCTCA
genomic: TAGCTAGCTTAGTCGAATCAGACACTCTTCTTATCCTTGCATCATTGAAGgtatgattaa ... taatttgcagGAGCAGCAAGTTTTAGAGCTTTCATCAGTGGGAAGTCAAGAACGCACCTCA
EST: gi|50337012|gb|CO532138.1|CO532138
EST:     TAGCTAGCTTAGTCGAATCAGACACTCTTCTTATCCTTGCATCATTGAAG                         GAGCAGCAAGTTTTAGAGCTTTCATCAGTGGGAAGTCAAGAACGCACCTCA
genomic: TAGCTAGCTTAGTCGAATCAGACACTCTTCTTATCCTTGCATCATTGAAGgtatgattaa ... taatttgcagGAGCAGCAAGTTTTAGAGCTTTCATCAGTGGGAAGTCAAGAACGCACCTCA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CCGTGGAGCGCATCAAGGCGGCGGTCTCCGGCGAGAGTGTTACCCAGCAGTAGCTAGCTTAGTCGAATCAGACACTCTTCTTATCCTTGCATCATTGAAGgtatgattaaaaacccaatcatatgaaggtttacaatttgcaagatttcatcccgttgtttcgtctgatcatcgtcggtcgccgcctttaatttgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG