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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCCGTCGTCGACGTCTCGCTGGACACCAGCTCAGTCCTCAAGTGCCGGCGCCGGCCGTCGGGATGCCTGATCCAGGAAATGCCCAATGGCTACTCAAAGgtctgtggtctctgtacgtccatgattgagattctcagtacagtagccgatggttcagatcatgagatttgtactgtatcatcatcag

Basic information

species Zea mays
transcript GRMZM2G001289_T02
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G001289_T03 (Zea mays), 5'ss of exon 3
lower sequence: EFJ19972 (Selaginella moellendorffii), 5'ss of exon 7
GGCCGTCGTCGACGTCTCGCTGGACACCAGCTCAGTCCT-CAAGTGCCGGCGCCGGCCGTCGGGATGCCTGATCCAGGAAATGCCCAATGGCTACTCAAAGgtctgtg----gtctctgtac-gtccatgattgagattctcagt-acagtagccgatggt-tcagatcatgagatttgtactgtatca--tcatcag---------------------------------------
 |  |  | ||    |||||  | || |  |    |||     ||||||| | || || |||||||  || |||||||| |||||||||||||||||||||||  |       || || |      | |  ||  | | ||   |  | ||  ||   ||  || ||   |  | | |||  |||  ||   |||                                          
CGTGGATG-CGCTCGCTCGCGAGGCAGCGCCCTCTTCCAATCGGTGCCGGAGACGCCCCTCGGGATATCTCATCCAGGACATGCCCAATGGCTACTCAAAGgtacgcacaaaatcacttttttactcgttcttccgctgctttctcgccgtctccatgggagtccgaggctctggtgtgtgatgtgacaatccattgacttgtgcgttggattcttgtgtgctgcgaaaacttttag

upper sequence: GRMZM2G001289_T03 (Zea mays), 5'ss of exon 3
lower sequence: EFJ10492 (Selaginella moellendorffii), 5'ss of exon 7
GGCCGTCGTCGACGTCTCGCTGGACACCAGCTCAGTCCT-CAAGTGCCGGCGCCGGCCGTCGGGATGCCTGATCCAGGAAATGCCCAATGGCTACTCAAAGgtctgtgg---------tctctgtacgtccatgattgagattctcagt------acagtagccgatggttcagatcatgagatttg-tactgtatcatcatcag---------------------------------
 |  |  | ||    |||||  | || |  |    |||     ||||||| | || || |||||||  || |||||||| |||||||||||||||||||||||  |            | | |   ||| | |        |||||         |  | || |   || || | |  || ||| ||  | |  ||   | |  |                                 
CGTAGATG-CGCTCGCTCGCGAGGCAGCGCCCTCTTCCAATCGGTGCCGGAGACGCCCCTCGGGATATCTCATCCAGGACATGCCCAATGGCTACTCAAAGgtacgcacaaaatcacttttttactcgttcttccgctgctttctcgtcgtctccatgggagtccgaggctctggt-gtgtgatgtgacaatccattgacttgtgcgttggattcttgtgtgctgcgaaaacttttag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|160481559|gb|EY254391.1|EY254391
EST:     GCCGGCCGTCGGGATGCCTGATCCAGGAAATGCCCAATGGCTACTCAAAG                         GTGACCTGGGTGGAACACGTCGAGGTGGATGACAGGTCGGTAAACGGCATC
genomic: GCCGGCCGTCGGGATGCCTGATCCAGGAAATGCCCAATGGCTACTCAAAGgtctgtggtc ... tcatcatcagGTGACCTGGGTGGAACACGTCGAGGTGGATGACAGGTCGGTAAACGGCATC