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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCAAATCGAGGTGATAGCTTGGACCGTAATATTGATGATGAAAATCGGCAGACAAAGGACTTCTTGATTCTTgtaaggacctattagtacctcttattctcgattgtccttcacaagttgtagtacgcaagcaagacttttgagtttagacctttcttgcttccatcaaagactaggtaggacccatgtgatcctatacatttcatcaatgaactttgaaatagtaagcattttggattgggcag

Basic information

species Zea mays
transcript GRMZM2G000393_T01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G000393_T01 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os06g07905.2 (Oryza sativa), 5'ss of exon 6
TGCAAATCGAGGTGATAGCTTGGACCGTAATATTGATGATGAAAATCGGCAGACAAAGGACTTCTTGATTCTTgtaaggacctattagtacctcttat------tctcgattgtccttcacaagttgt-agtacgcaagca-agacttttgagtttagacctttcttgcttccatcaaagactaggtaggacccatgtgatcctatacatttcatcaatgaactttgaaatagtaagcattttggattgggcag
||||||||||||||||||||||||||| || || |||||||||||||| | ||| || || ||||||||||||||||||| ||| ||  |  |  |||      ||    |||||||||||||    | |||||   || | |  |    || ||| | | || |||| ||                                                                                   
TGCAAATCGAGGTGATAGCTTGGACCGCAACATCGATGATGAAAATCGTCGGACGAAAGATTTCTTGATTCTTgtaaggatctaataacatttaatatcatttttccaatttgtccttcacaaaaaattagtactgtagtacatgcagaagacttttggctttgcttggttgt---------------------------------------------------------------------------------

upper sequence: GRMZM2G000393_T01 (Zea mays), 5'ss of exon 6
lower sequence: GLYMA14G14000.1 (Glycine max), 5'ss of exon 6
TGCAAATCGAGGTGATAGCTTGGACCGTAATATTGATGATGAAAATCGGCAGACAAAGGACTTCTTGATTCTTgtaag-gacctattagtacctcttattctcgattg--tccttcacaagttgtagtacgca-agcaagacttttgagtttagacctttcttgcttccatcaaagactaggtaggacccatgtgatcctatacatttcatcaatgaactttgaaatagtaagcattttggattgggcag
||| ||||||||||||||||| || || |||||||| || ||||||||    |||||||| ||| |||||||||||||  |  || | |||  | || || |   |||  ||  |   | ||| |     | | ||   || |    ||   | || |   |   ||   |                                                                               
TGCTAATCGAGGTGATAGCTTAGATCGCAATATTGACGAGGAAAATCGCACAACAAAGGATTTCCTGATTCTTgtaagcaagatagttgtaggtttttttgtaatttgaatctgttcaatgttttgccttggatagtgtgagtggacaggaaacacttaattcaatttggttt-----------------------------------------------------------------------------

upper sequence: GRMZM2G000393_T01 (Zea mays), 5'ss of exon 6
lower sequence: Vv04s0008g06480.t01 (Vitis vinifera), 5'ss of exon 6
TGCAAATCGAGGTGATAGCTTGGACCGTAATATTGATGATGAAAATCGGCAGACAAAGGACTTCTTGATTCTTgtaaggacc---tattagtacctcttattctcgattgtccttcacaagttgtagtacgcaagcaagacttttga-gtttagacctttcttgcttccatcaaagactaggtaggacccatgtgatcctatacatttcatcaatgaactttgaaatagtaagcattttggattgggcag
||| ||||||||||||||||| || || ||||||||||  ||||||||   ||||||||| |||||||||||||||||       | | |||   |   |   || | | |  ||||  | ||    | |     || || |    | |||   |   || ||   |     | ||                                                                          
TGCTAATCGAGGTGATAGCTTAGATCGCAATATTGATGTGGAAAATCGCTTGACAAAGGATTTCTTGATTCTTgtaagttatggatttcagtgt-taccaaaatcaactat--ttcattattttgttttcttttacatgagtagacatgttgccaaaatttttatcttagaaagag--------------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148982630|gb|EE028428.2|EE028428
EST:     ACCGTAATATTGATGATGAAAATCGGCAGACAAAGGACTTCTTGATTCTT                         GAAAGTCATGAAGAGGCTGCAGAAGAATTACCGAGCAAAGCAAAAATTTTC
genomic: ACCGTAATATTGATGATGAAAATCGGCAGACAAAGGACTTCTTGATTCTTgtaaggacct ... gattgggcagGAAAGTCATGAAGAGGCTGCAGAAGAATTACCGAGCAAAGCAAAAATTTTC
EST: gi|78093005|gb|DV521379.1|DV521379
EST:     ACCGTAATATTGATGATGAAAATCGGCAGACAAAGGACTTCTTGATTCTT                         GAAAGTCATGAAGAGGCTGCAGAAGAATTACCGAGCAAAGCAAAAATTTTC
genomic: ACCGTAATATTGATGATGAAAATCGGCAGACAAAGGACTTCTTGATTCTTgtaaggacct ... gattgggcagGAAAGTCATGAAGAGGCTGCAGAAGAATTACCGAGCAAAGCAAAAATTTTC
EST: gi|71435122|gb|DR816172.1|DR816172
EST:     ACCGTAATATTGATGATGAAAATCGGCAGACAAAGGACTTCTTGATTCTT                         GAAAGTCATGAAGAGGCTGCAGAAGAATTACCGAGCAAAGCAAAAATTTTC
genomic: ACCGTAATATTGATGATGAAAATCGGCAGACAAAGGACTTCTTGATTCTTgtaaggacct ... gattgggcagGAAAGTCATGAAGAGGCTGCAGAAGAATTACCGAGCAAAGCAAAAATTTTC
EST: gi|32834517|gb|CD974195.1|CD974195
EST:     ACCGTAATATTGATGATGAAAATCGGCAGACAAAGGACTTCTTGATTCTT                         GAAAGTCATGAAGAGGCTGCAGAAGAATTACCGAGCAAAGCAAAAATTTTC
genomic: ACCGTAATATTGATGATGAAAATCGGCAGACAAAGGACTTCTTGATTCTTgtaaggacct ... gattgggcagGAAAGTCATGAAGAGGCTGCAGAAGAATTACCGAGCAAAGCAAAAATTTTC
EST: gi|149106895|gb|EE188795.2|EE188795
EST:     ACCGTAATATTGATGATGAAAATCGGCAGACAAAGGACTTCTTGATTCTT                         GAAAGTCATGAAGAGGCTGCAGAAGAATTACCGAGCAAAGCAAAAATTTTC
genomic: ACCGTAATATTGATGATGAAAATCGGCAGACAAAGGACTTCTTGATTCTTgtaaggacct ... gattgggcagGAAAGTCATGAAGAGGCTGCAGAAGAATTACCGAGCAAAGCAAAAATTTTC
EST: gi|76920610|gb|DV168260.1|DV168260
EST:     ACCGTAATATTGATGATGAAAATCGGCAGACAAAGGACTTCTTGATTCTT                         GAAAGTCATGAAGAGGCTGCAGAAGAATTACCGAGCAAAGCAAAAATTTTC
genomic: ACCGTAATATTGATGATGAAAATCGGCAGACAAAGGACTTCTTGATTCTTgtaaggacct ... gattgggcagGAAAGTCATGAAGAGGCTGCAGAAGAATTACCGAGCAAAGCAAAAATTTTC
EST: gi|31359008|gb|CD443365.1|CD443365
EST:     ACCGTAATATTGATGATGAAAATCGGCAGACAAAGGACTTCTTGATTCTT                         GAAAGTCATGAAGAGGCTGCAGAAGAATTACCGAGCAAAGCAAAAATTTTC
genomic: ACCGTAATATTGATGATGAAAATCGGCAGACAAAGGACTTCTTGATTCTTgtaaggacct ... gattgggcagGAAAGTCATGAAGAGGCTGCAGAAGAATTACCGAGCAAAGCAAAAATTTTC
EST: gi|60338589|gb|DN205562.1|DN205562
EST:     ACCGTAATATTGATGATGAAAATCGGCAGACAAAGGACTTCTTGATTCTT                         GAAAGTCATGAAGAGGCTGCAGAAGAATTACCGAGCAAAGCAAAAATTTTC
genomic: ACCGTAATATTGATGATGAAAATCGGCAGACAAAGGACTTCTTGATTCTTgtaaggacct ... gattgggcagGAAAGTCATGAAGAGGCTGCAGAAGAATTACCGAGCAAAGCAAAAATTTTC
EST: gi|31357853|gb|CD442210.1|CD442210
EST:     ACCGTAATATTGATGATGAAAATCGGCAGACAAAGGACTTCTTGATTCTT                         GAAAGTCATGAAGAGGCTGCAGAAGAATTACCGAGCAAAGCAAAAATTTTC
genomic: ACCGTAATATTGATGATGAAAATCGGCAGACAAAGGACTTCTTGATTCTTgtaaggacct ... gattgggcagGAAAGTCATGAAGAGGCTGCAGAAGAATTACCGAGCAAAGCAAAAATTTTC
EST: gi|71436236|gb|DR817286.1|DR817286
EST:     ACCGTAATTTTGATGATGAAAATCGGCAGACAAAGGACTTCTTGATTCTT                         GAAAGTCATGAAGAGGCTGCAGAAGAATTACCGAGCAAAGCAAAAATTTTC
genomic: ACCGTAATATTGATGATGAAAATCGGCAGACAAAGGACTTCTTGATTCTTgtaaggacct ... gattgggcagGAAAGTCATGAAGAGGCTGCAGAAGAATTACCGAGCAAAGCAAAAATTTTC
EST: gi|50323552|gb|CO518678.1|CO518678
EST:     CGTAATATTGATGATGAAAATCGGCAGACAAAGGACTTCTTGATTCTT                         GAAAGTCATGAAGAGGCTGCAGAAGAATTACCGAGCAAAGCAAAAATTTTC
genomic: CGTAATATTGATGATGAAAATCGGCAGACAAAGGACTTCTTGATTCTTgtaaggacct ... gattgggcagGAAAGTCATGAAGAGGCTGCAGAAGAATTACCGAGCAAAGCAAAAATTTTC
EST: gi|149096405|gb|EE182139.2|EE182139
EST:     ACCGTAATATTGATGATGAAAATCGGCAGACAAAGGACTTCTTGATTCTT                         GAAAGTCATGAAGAGGCTGCAGAAGAATTACCGAGCAAAGCAAAAATTTTC
genomic: ACCGTAATATTGATGATGAAAATCGGCAGACAAAGGACTTCTTGATTCTTgtaaggacct ... gattgggcagGAAAGTCATGAAGAGGCTGCAGAAGAATTACCGAGCAAAGCAAAAATTTTC
EST: gi|4775973|gb|AI664976.1|AI664976
EST:     GACTTCTTGATTCTT                         GAAAGTCATGAAGAGGCTGCAGAAGAATTACCGAGCAAAGCAAAAATTTTC
genomic: GACTTCTTGATTCTTgtaaggacct ... gattgggcagGAAAGTCATGAAGAGGCTGCAGAAGAATTACCGAGCAAAGCAAAAATTTTC
EST: gi|78021331|gb|DV489718.1|DV489718
EST:     ACCGTAATATTGATGATGAAAATCGGCAGACAAAGGACTTCTTGATTCTT                         GAAAGTCATGAAGAGGCTGCAGAAGAATTACCGAGCAAAGCAAAAATTTTC
genomic: ACCGTAATATTGATGATGAAAATCGGCAGACAAAGGACTTCTTGATTCTTgtaaggacct ... gattgggcagGAAAGTCATGAAGAGGCTGCAGAAGAATTACCGAGCAAAGCAAAAATTTTC
EST: gi|60346760|gb|DN213733.1|DN213733
EST:     ACCGTAATATTGATGATGAAAATCGGCAGACAAAGGACTTCTTGATTCTT                         GAAAGTCATGAAGAGGCTGCAGAAGAATTACCGAGCAAAGCAAAAATTTTC
genomic: ACCGTAATATTGATGATGAAAATCGGCAGACAAAGGACTTCTTGATTCTTgtaaggacct ... gattgggcagGAAAGTCATGAAGAGGCTGCAGAAGAATTACCGAGCAAAGCAAAAATTTTC
EST: gi|71426993|gb|DR808043.1|DR808043
EST:     ACCGTAATATTGATGATGAAAATCGGCAGACAAAGGACTTCTTGATTCTT                         GAAAGTCATGAAGAGGCTGCAGAAGAATTACCGAGCAAAGCAAAAATTTTC
genomic: ACCGTAATATTGATGATGAAAATCGGCAGACAAAGGACTTCTTGATTCTTgtaaggacct ... gattgggcagGAAAGTCATGAAGAGGCTGCAGAAGAATTACCGAGCAAAGCAAAAATTTTC
EST: gi|149005474|gb|EE040029.2|EE040029
EST:     ACCGTAATATTGATGATGAAAATCGGCAGACAAAGGACTTCTTGATTCTT                         GAAAGTCATGAAGAGGCTGCAGAAGAATTACCGAGCAAAGCAAAAATTTTC
genomic: ACCGTAATATTGATGATGAAAATCGGCAGACAAAGGACTTCTTGATTCTTgtaaggacct ... gattgggcagGAAAGTCATGAAGAGGCTGCAGAAGAATTACCGAGCAAAGCAAAAATTTTC
EST: gi|61119808|gb|DN560769.1|DN560769
EST:     ACCGTAATATTGATGATGAAAATCGGCAGACAAAGGACTTCTTGATTCTT                         GAAAGTCATGAAGAGGCTGCAGAAGAATTACCGAGCAAAGCAAAAATTTTC
genomic: ACCGTAATATTGATGATGAAAATCGGCAGACAAAGGACTTCTTGATTCTTgtaaggacct ... gattgggcagGAAAGTCATGAAGAGGCTGCAGAAGAATTACCGAGCAAAGCAAAAATTTTC
EST: gi|50323553|gb|CO518679.1|CO518679
EST:     ACCGTAATATTGATGATGAAAATCGGCAGACAAAGGACTTCTTGATTCTT                         GAAAGTCATGAAGAGGCTGCAGAAGAATTACCGAGCAAAGCAAAAATTTTC
genomic: ACCGTAATATTGATGATGAAAATCGGCAGACAAAGGACTTCTTGATTCTTgtaaggacct ... gattgggcagGAAAGTCATGAAGAGGCTGCAGAAGAATTACCGAGCAAAGCAAAAATTTTC
EST: gi|94479524|gb|EB708482.1|EB708482
EST:     ACCGTAATATTGATGATGAAAATCGGCAGACAAAGGACTTCTTGATTCTT                         GAAAGTCATGAAGAGGCTGCAGAAGAATTACCGAGCAAAGCAAAAATTTTC
genomic: ACCGTAATATTGATGATGAAAATCGGCAGACAAAGGACTTCTTGATTCTTgtaaggacct ... gattgggcagGAAAGTCATGAAGAGGCTGCAGAAGAATTACCGAGCAAAGCAAAAATTTTC
EST: gi|149064607|gb|EE286478.2|EE286478
EST:     ACCGTAATATTGATGATGAAAATCGGCAGACAAAGGACTTCTTGATTCTT                         GAAAGTCATGAAGAGGCTGCAGAAGAATTACCGAGCAAAGCAAAAATTTTC
genomic: ACCGTAATATTGATGATGAAAATCGGCAGACAAAGGACTTCTTGATTCTTgtaaggacct ... gattgggcagGAAAGTCATGAAGAGGCTGCAGAAGAATTACCGAGCAAAGCAAAAATTTTC
EST: gi|60344825|gb|DN211798.1|DN211798
EST:     ACCGTAATATTGATGATGAAAATCGGCAGACAAAGGACTTCTTGATTCTT                         GAAAGTCATGAAGAGGCTGCAGAAGAATTACCGAGCAAAGCAAAAATTTTC
genomic: ACCGTAATATTGATGATGAAAATCGGCAGACAAAGGACTTCTTGATTCTTgtaaggacct ... gattgggcagGAAAGTCATGAAGAGGCTGCAGAAGAATTACCGAGCAAAGCAAAAATTTTC
EST: gi|71311661|gb|DR792235.1|DR792235
EST:     ACCGTAATATTGATGATGAAAATCGGCAGACAAAGGACTTCTTGATTCTT                         GAAAGTCATGAAGAGGCTGCAGAAGAATTACCGAGCAAAGCAAAAATTTTC
genomic: ACCGTAATATTGATGATGAAAATCGGCAGACAAAGGACTTCTTGATTCTTgtaaggacct ... gattgggcagGAAAGTCATGAAGAGGCTGCAGAAGAATTACCGAGCAAAGCAAAAATTTTC
EST: gi|32839844|gb|CD979525.1|CD979525
EST:     ACCGTAATATTGATGATGAAAATCGGCAGACAAAGGACTTCTTGATTCTT                         GAAAGTCATGAAGAGGCTGCAGAAGAATTACCGAGCAAAGCAAAAATTTTC
genomic: ACCGTAATATTGATGATGAAAATCGGCAGACAAAGGACTTCTTGATTCTTgtaaggacct ... gattgggcagGAAAGTCATGAAGAGGCTGCAGAAGAATTACCGAGCAAAGCAAAAATTTTC
EST: gi|148994442|gb|EE034088.2|EE034088
EST:     ACCGTAATATTGATGATGAAAATCGGCAGACAAAGGACTTCTTGATTCTT                         GAAAGTCATGAAGAGGCTGCAGAAGAATTACCGAGCAAAGCAAAAATTTTC
genomic: ACCGTAATATTGATGATGAAAATCGGCAGACAAAGGACTTCTTGATTCTTgtaaggacct ... gattgggcagGAAAGTCATGAAGAGGCTGCAGAAGAATTACCGAGCAAAGCAAAAATTTTC
EST: gi|71435123|gb|DR816173.1|DR816173
EST:     ACCGTAATATTGATGATGAAAATCGGCAGACAAAGGACTTCTTGATTCTT                         GAAAGTCATGAAGAGGCTGCAGAAGAATTACCGAGCAAAGCAAAAATTTTC
genomic: ACCGTAATATTGATGATGAAAATCGGCAGACAAAGGACTTCTTGATTCTTgtaaggacct ... gattgggcagGAAAGTCATGAAGAGGCTGCAGAAGAATTACCGAGCAAAGCAAAAATTTTC
EST: gi|71772159|gb|DR970096.1|DR970096
EST:     ACCGTAATATTGATGATGAAAATCGGCAGACAAAGGACTTCTTGATTCTT                         GAAAGTCATGAAGAGGCTGCAGAAGAATTACCGAGCAAAGCAAAAATTTTC
genomic: ACCGTAATATTGATGATGAAAATCGGCAGACAAAGGACTTCTTGATTCTTgtaaggacct ... gattgggcagGAAAGTCATGAAGAGGCTGCAGAAGAATTACCGAGCAAAGCAAAAATTTTC
EST: gi|22521196|gb|BU080007.1|BU080007
EST:     ACCGTAATATTGATGATGAAAATCGGCAGACAAAGGACTTCTTGATTCTT                         GAAAGTCATGAAGAGGCTGCAG
genomic: ACCGTAATATTGATGATGAAAATCGGCAGACAAAGGACTTCTTGATTCTTgtaaggacct ... gattgggcagGAAAGTCATGAAGAGGCTGCAG
EST: gi|149096404|gb|EE182138.2|EE182138
EST:     ACCGTAATATTGATGATGAAAATCGGCAGACAAAGGACTTCTTGATTCTT                         GAAAGTCATGAAGAGGCTGCAGAAGAATTACCGAGCAAAGCAAAAATTTTC
genomic: ACCGTAATATTGATGATGAAAATCGGCAGACAAAGGACTTCTTGATTCTTgtaaggacct ... gattgggcagGAAAGTCATGAAGAGGCTGCAGAAGAATTACCGAGCAAAGCAAAAATTTTC
EST: gi|110200892|gb|EC882789.1|EC882789
EST:     AAAGGACTTCTTGATTCTT                         GAAAGTCATGAAGAGGCTGCAGAAGAATTACCGAGCAAAGCAAAAANNNNN
genomic: AAAGGACTTCTTGATTCTTgtaaggacct ... gattgggcagGAAAGTCATGAAGAGGCTGCAGAAGAATTACCGAGCAAAGCAAAAATTTTC
EST: gi|5525207|gb|AI861205.1|AI861205
EST:     ACCGTAATATTGATGATGAAAATCGGCAGACAAAGGACTTCTTGATTCTT                         GAAAGTCATGAAGAGGCTGCAGAA
genomic: ACCGTAATATTGATGATGAAAATCGGCAGACAAAGGACTTCTTGATTCTTgtaaggacct ... gattgggcagGAAAGTCATGAAGAGGCTGCAGAA
EST: gi|211281812|gb|FL349985.1|FL349985
EST:     GTAATATTGATGATGAANNATCG-CAGAACAA-GGACTTCTTGATTTCTT                         GAA-GTCATGAAGAAGCTGCAGAA
genomic: GTAATATTGATGATGAAA-ATCGGCAGA-CAAAGGACTTCTTGATT-CTTgtaaggacct ... gattgggcagGAAAGTCATGAAGAGGCTGCAGAA
EST: gi|67038278|gb|CO464608.1|CO464608
EST:     ACCGTAATATTGATGATGAAAATCGGCAGACAAAGGACTTCTTGATTCTT                         GAAAGTCATGAAGAGGCTGCAGAAGAATTACCGAGCAAAGCAAAAATTTTC
genomic: ACCGTAATATTGATGATGAAAATCGGCAGACAAAGGACTTCTTGATTCTTgtaaggacct ... gattgggcagGAAAGTCATGAAGAGGCTGCAGAAGAATTACCGAGCAAAGCAAAAATTTTC
EST: gi|78093004|gb|DV521378.1|DV521378
EST:     ACCGTAATATTGATGATGAAAATCGGCAGACAAAGGACTTCTTGATTCTT                         GAAAGTCATGAAGAGGCTGCAGAAGAATTACCGAGCAAAGCAAAAATTTTC
genomic: ACCGTAATATTGATGATGAAAATCGGCAGACAAAGGACTTCTTGATTCTTgtaaggacct ... gattgggcagGAAAGTCATGAAGAGGCTGCAGAAGAATTACCGAGCAAAGCAAAAATTTTC
EST: gi|211130920|gb|FL136658.1|FL136658
EST:     AAATCGGCAGACAAAGGACTTCTTGATTCTT                         GAAAGTBATGAAGAGGCTGCAGAAGAATTACCGAGCAAAGCAAAAATTTTC
genomic: AAATCGGCAGACAAAGGACTTCTTGATTCTTgtaaggacct ... gattgggcagGAAAGTCATGAAGAGGCTGCAGAAGAATTACCGAGCAAAGCAAAAATTTTC
EST: gi|60346466|gb|DN213439.1|DN213439
EST:     ACCGTAATATTGATGATGAAAATCGGCAGACAAAGGACTTCTTGATTCTT                         GAAAGTCATGAAGAGGCTGCAGAAGAATTACCGAGCAAAGCAAAAATTTTC
genomic: ACCGTAATATTGATGATGAAAATCGGCAGACAAAGGACTTCTTGATTCTTgtaaggacct ... gattgggcagGAAAGTCATGAAGAGGCTGCAGAAGAATTACCGAGCAAAGCAAAAATTTTC
EST: gi|32928809|gb|CF033621.1|CF033621
EST:     ACCGTAATATTGATGATGAAAATCGGCAGACAAAGGACTTCTTGATTCTT                         GAAAGTCATGAAGAGGCTGCAGAAGAATTACCGAGCAAAGCAAAAATTTTC
genomic: ACCGTAATATTGATGATGAAAATCGGCAGACAAAGGACTTCTTGATTCTTgtaaggacct ... gattgggcagGAAAGTCATGAAGAGGCTGCAGAAGAATTACCGAGCAAAGCAAAAATTTTC
EST: gi|148940752|gb|EC885572.2|EC885572
EST:     GATGAAAATCGGCAGACAAAGGACTTCTTGATTTCTT                         GAAAGTCATGAAGAGGCTGCAGAAGAATTACCGAGCAAAGCAAAAATTTT
genomic: GATGAAAATCGGCAGACAAAGGACTTCTTGA-TTCTTgtaaggacct ... gattgggcagGAAAGTCATGAAGAGGCTGCAGAAGAATTACCGAGCAAAGCAAAAATTTT
EST: gi|71436237|gb|DR817287.1|DR817287
EST:     ACCGTAATATTGATGATGAAAATCGGCAGACAAAGGACTTCTTGATTCTT                         GAAAGTCATGAAGAGGCTGCAGAAGAATTCCCGAGCAAAGCAAAAATTTTC
genomic: ACCGTAATATTGATGATGAAAATCGGCAGACAAAGGACTTCTTGATTCTTgtaaggacct ... gattgggcagGAAAGTCATGAAGAGGCTGCAGAAGAATTACCGAGCAAAGCAAAAATTTTC
EST: gi|71772160|gb|DR970097.1|DR970097
EST:     ACCGTAATATTGATGATGAAAATCGGCAGACAAAGGACTTCTTGATTCTT                         GAAAGTCATGAAGAGGCTGCAGAAGAATTACCGAGCAAAGCAAAAATTTTC
genomic: ACCGTAATATTGATGATGAAAATCGGCAGACAAAGGACTTCTTGATTCTTgtaaggacct ... gattgggcagGAAAGTCATGAAGAGGCTGCAGAAGAATTACCGAGCAAAGCAAAAATTTTC
EST: gi|32839845|gb|CD979526.1|CD979526
EST:     ACCGTAATATTGATGATGAAAATCGGCAGACAAAGGACTTCTTGATTCTT                         GAAAGTCATGAAGAGGCTGCAGAAGAATTACCGAGCAAAGCAAAAATTTTC
genomic: ACCGTAATATTGATGATGAAAATCGGCAGACAAAGGACTTCTTGATTCTTgtaaggacct ... gattgggcagGAAAGTCATGAAGAGGCTGCAGAAGAATTACCGAGCAAAGCAAAAATTTTC
EST: gi|148938471|gb|EC882790.2|EC882790
EST:     ACCGTAATATTGATGATGAAAATCGGCAGACAAAGGACTTCTTGATTCTT                         GAAAGTCATGAAGAGGCTGCAGAAGAATTACCGAGCAAAGCAAAAATTTTC
genomic: ACCGTAATATTGATGATGAAAATCGGCAGACAAAGGACTTCTTGATTCTTgtaaggacct ... gattgggcagGAAAGTCATGAAGAGGCTGCAGAAGAATTACCGAGCAAAGCAAAAATTTTC
EST: gi|31350524|gb|CD434881.1|CD434881
EST:     ACCGTAATATTGATGATGAAAATCGGCAGACAAAGGGCTTCTTGATTCTT                         GAAAGTCATGAAGAGGCTGCAGAAGAATTACCGAGCAAAGCAAAAATTTTC
genomic: ACCGTAATATTGATGATGAAAATCGGCAGACAAAGGACTTCTTGATTCTTgtaaggacct ... gattgggcagGAAAGTCATGAAGAGGCTGCAGAAGAATTACCGAGCAAAGCAAAAATTTTC
EST: gi|71426994|gb|DR808044.1|DR808044
EST:     ACCGTAATATTGATGATGAAAATCGGCAGACAAAGGACTTCTTGATTCTT                         GAAAGTCATGAAGAGGCTGCAGAAGAATTACCGAGCAAAGCNAAAATTTTC
genomic: ACCGTAATATTGATGATGAAAATCGGCAGACAAAGGACTTCTTGATTCTTgtaaggacct ... gattgggcagGAAAGTCATGAAGAGGCTGCAGAAGAATTACCGAGCAAAGCAAAAATTTTC
EST: gi|5124017|gb|AI745858.1|AI745858
EST:     -CCGTAATA-TGATGATG-AAATCGGCAGACAAAGGACTTCTTGATTCTT                         GAAAGTCATGAAGAGGCTGCAGAAGAATTACCGAGCAAAGCAAAAATTTTC
genomic: ACCGTAATATTGATGATGAAAATCGGCAGACAAAGGACTTCTTGATTCTTgtaaggacct ... gattgggcagGAAAGTCATGAAGAGGCTGCAGAAGAATTACCGAGCAAAGCAAAAATTTTC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 168

TGCAAATCGAGGTGATAGCTTGGACCGTAATATTGATGATGAAAATCGGCAGACAAAGGACTTCTTGATTCTTgtaaggacct ... gattgggcagGAAAGTCATGAAGAGGCTGCAGAAGAATTACCGAGCAAAGCAAAAATTTTCTTCAGTGCTGCAGTTGAAGCCTGGGATGCAGAATTTTATGTCAAAGTTG


Block sizes: 47 (upstream exon), 49 (downstream exon)
Score: 181

TGCAAATCGAGGTGATAGCTTGGACCGTAATATTGATGATGAAAATCGGCAGACAAAGGACTTCTTGATTCTTgtaaggacct ... gattgggcagGAAAGTCATGAAGAGGCTGCAGAAGAATTACCGAGCAAAGCAAAAATTTTCTTCAGTGCTGCAGTTGAAGCCTGGGATGCAGAATTTTATGTCAAAGTTG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 237

TGCAAATCGAGGTGATAGCTTGGACCGTAATATTGATGATGAAAATCGGCAGACAAAGGACTTCTTGATTCTTgtaaggacct ... gattgggcagGAAAGTCATGAAGAGGCTGCAGAAGAATTACCGAGCAAAGCAAAAATTTTCTTCAGTGCTGCAGTTGAAGCCTGGGATGCAGAATTTTATGTCAAAGTTG


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 255

TGCAAATCGAGGTGATAGCTTGGACCGTAATATTGATGATGAAAATCGGCAGACAAAGGACTTCTTGATTCTTgtaaggacct ... gattgggcagGAAAGTCATGAAGAGGCTGCAGAAGAATTACCGAGCAAAGCAAAAATTTTCTTCAGTGCTGCAGTTGAAGCCTGGGATGCAGAATTTTATGTCAAAGTTG