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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAGATAAAAGAAAAGATCTGTGTTGCTGGTGGAGACCCAACAATAGTAGAATCTCCTACTGAACCCAAGTGGTCTTCAAAAGgtatttgaaatttagtactgaactttgtcttgtattttaagtgttacagttcaaggacatgggtaggcgactttctgcatgttgattatctacttggttt...

Basic information

species Zea mays
transcript GRMZM2G000231_T01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G000231_T01 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os06g11190.1 (Oryza sativa), 5'ss of exon 6
AGAGATAAAAGAAAAGATCTGTGTTGCTGGTGGAGACCCAACAATAGTAGAATCTCCTACTGAACCCAAGTGGTCTTCAAAAGgtatttgaaatttagtactgaactttgtcttgtattttaagtgttacagttcaaggacatgggtaggcgacttt----ctgcatgttgattatctacttggttt
|||| || |  | ||||| ||  |||||||||| ||||||||  ||||||||||||||||||||||||||||| ||||||||||| || | | |||  |||  |  ||| | || | ||     | |||    |  | ||||||      |  | ||    ||  |   |  || ||| | |||   
AGAGGTACACAACAAGATTTGCATTGCTGGTGGTGACCCAACGTTAGTAGAATCTCCTACTGAACCCAAGTGGACTTCAAAAGgtgttagcattttcatacccag-tttatattattttaagttttttatgtgttcaagacatgctctttcatccttgtagctataccattcttctctgcatgg---

upper sequence: GRMZM2G000231_T01 (Zea mays), 5'ss of exon 6
lower sequence: Vv18s0001g11150.t01 (Vitis vinifera), 5'ss of exon 6
AGAGATAAAAGAAAAGATCTGTGTTGCTGGTGGAGACCCAACAATAGTAGAATCTCCTACTGAACCCAAGTGGTCTTCAAAAGgtatttgaaatttagtactgaactttgtcttgtattttaagtgttacagttcaaggacatgggtaggcgactttctgcatgttgattatctacttggttt----
||| ||     |    || |||||||||||| | || || ||  |  | ||||||||||||||||| ||||||||||| | |||||  |    |||| |  |   | | ||  |  |       ||  ||||   | |  | |    |  | ||| | |   | |||||     |      |     
AGATATCTGCAAGCGCATTTGTGTTGCTGGTTGTGATCCTACGCTTTTGGAATCTCCTACTGAACCTAAGTGGTCTTCCAGAGgtacctt---tttaattgtttgcctggttattgaaaaattctgcaacaggctatgttcgtatcaaaactactgtat-ttttttgataggtaaaaaaaatacagt